Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2768 and GFF2769 are separated by 92 nucleotides GFF2769 and GFF2770 are separated by 75 nucleotides GFF2770 and GFF2771 are separated by 34 nucleotides
GFF2768 - 3-ketoacyl-CoA thiolase 2 [fadN-fadA-fadE operon] (EC 2.3.1.16), at 198,083 to 199,216
GFF2768
GFF2769 - Transcriptional regulator, AcrR family, at 199,309 to 199,896
GFF2769
GFF2770 - BUG/TctC family periplasmic protein, at 199,972 to 200,964
GFF2770
GFF2771 - BUG/TctC family periplasmic protein, at 200,999 to 201,970
GFF2771
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 199.047 kb on + strand, within GFF2768 at 199.234 kb on - strand at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.611 kb on - strand, within GFF2769 at 199.611 kb on - strand, within GFF2769 at 199.611 kb on - strand, within GFF2769 at 199.611 kb on - strand, within GFF2769 at 199.739 kb on + strand, within GFF2769 at 199.739 kb on + strand, within GFF2769 at 199.739 kb on + strand, within GFF2769 at 199.740 kb on - strand, within GFF2769 at 199.740 kb on - strand, within GFF2769 at 199.740 kb on - strand, within GFF2769 at 199.740 kb on - strand, within GFF2769 at 199.799 kb on + strand, within GFF2769 at 199.800 kb on - strand, within GFF2769 at 199.898 kb on + strand at 199.898 kb on + strand at 199.898 kb on + strand at 199.899 kb on - strand at 199.899 kb on - strand at 199.899 kb on - strand at 199.902 kb on + strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.908 kb on - strand at 199.908 kb on - strand at 199.908 kb on - strand at 200.036 kb on + strand at 200.141 kb on + strand, within GFF2770 at 200.141 kb on + strand, within GFF2770 at 200.141 kb on + strand, within GFF2770 at 200.142 kb on - strand, within GFF2770 at 200.142 kb on - strand, within GFF2770 at 200.142 kb on - strand, within GFF2770 at 200.142 kb on - strand, within GFF2770 at 200.216 kb on + strand, within GFF2770 at 200.216 kb on + strand, within GFF2770 at 200.216 kb on + strand, within GFF2770 at 200.217 kb on - strand, within GFF2770 at 200.217 kb on - strand, within GFF2770 at 200.217 kb on - strand, within GFF2770 at 200.396 kb on + strand, within GFF2770 at 200.396 kb on + strand, within GFF2770 at 200.396 kb on + strand, within GFF2770 at 200.396 kb on + strand, within GFF2770 at 200.397 kb on - strand, within GFF2770 at 200.397 kb on - strand, within GFF2770 at 200.397 kb on - strand, within GFF2770 at 200.579 kb on + strand, within GFF2770 at 200.579 kb on + strand, within GFF2770 at 200.579 kb on + strand, within GFF2770 at 200.579 kb on + strand, within GFF2770 at 200.579 kb on + strand, within GFF2770 at 200.579 kb on + strand, within GFF2770 at 200.580 kb on - strand, within GFF2770 at 200.580 kb on - strand, within GFF2770 at 200.580 kb on - strand, within GFF2770 at 200.580 kb on - strand, within GFF2770 at 200.580 kb on - strand, within GFF2770 at 200.580 kb on - strand, within GFF2770 at 200.580 kb on - strand, within GFF2770 at 200.580 kb on - strand, within GFF2770 at 201.420 kb on + strand, within GFF2771 at 201.420 kb on + strand, within GFF2771 at 201.421 kb on - strand, within GFF2771 at 201.421 kb on - strand, within GFF2771 at 201.592 kb on + strand, within GFF2771 at 201.593 kb on - strand, within GFF2771 at 201.593 kb on - strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.594 kb on + strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.595 kb on - strand, within GFF2771 at 201.621 kb on + strand, within GFF2771 at 201.621 kb on + strand, within GFF2771 at 201.621 kb on + strand, within GFF2771 at 201.622 kb on - strand, within GFF2771 at 201.622 kb on - strand, within GFF2771 at 201.622 kb on - strand, within GFF2771 at 201.622 kb on - strand, within GFF2771 at 201.622 kb on - strand, within GFF2771 at 201.622 kb on - strand, within GFF2771 at 201.645 kb on + strand, within GFF2771 at 201.645 kb on + strand, within GFF2771 at 201.646 kb on - strand, within GFF2771 at 201.646 kb on - strand, within GFF2771 at 201.666 kb on + strand, within GFF2771 at 201.666 kb on + strand, within GFF2771 at 201.667 kb on - strand, within GFF2771 at 201.711 kb on + strand, within GFF2771 at 201.712 kb on - strand, within GFF2771 at 201.774 kb on + strand, within GFF2771 at 201.774 kb on + strand, within GFF2771 at 201.774 kb on + strand, within GFF2771 at 201.775 kb on - strand, within GFF2771
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 199,047 + GFF2768 0.85 +0.1 199,234 - +1.1 199,415 + GFF2769 0.18 -1.0 199,415 + GFF2769 0.18 -0.2 199,415 + GFF2769 0.18 -0.4 199,415 + GFF2769 0.18 -1.4 199,415 + GFF2769 0.18 -1.0 199,415 + GFF2769 0.18 +0.1 199,415 + GFF2769 0.18 -0.5 199,415 + GFF2769 0.18 -0.1 199,415 + GFF2769 0.18 -1.4 199,415 + GFF2769 0.18 +0.1 199,416 - GFF2769 0.18 +0.2 199,416 - GFF2769 0.18 -0.7 199,416 - GFF2769 0.18 +1.1 199,416 - GFF2769 0.18 +0.9 199,416 - GFF2769 0.18 -0.9 199,416 - GFF2769 0.18 -0.9 199,416 - GFF2769 0.18 +0.1 199,416 - GFF2769 0.18 -0.7 199,416 - GFF2769 0.18 +0.3 199,416 - GFF2769 0.18 -0.2 199,416 - GFF2769 0.18 +1.6 199,610 + GFF2769 0.51 -0.1 199,610 + GFF2769 0.51 -0.3 199,610 + GFF2769 0.51 -0.7 199,610 + GFF2769 0.51 +1.1 199,610 + GFF2769 0.51 -0.8 199,611 - GFF2769 0.51 -0.5 199,611 - GFF2769 0.51 -0.3 199,611 - GFF2769 0.51 -1.1 199,611 - GFF2769 0.51 -0.7 199,739 + GFF2769 0.73 -0.9 199,739 + GFF2769 0.73 -1.7 199,739 + GFF2769 0.73 -0.2 199,740 - GFF2769 0.73 -0.4 199,740 - GFF2769 0.73 -0.6 199,740 - GFF2769 0.73 -0.2 199,740 - GFF2769 0.73 +0.6 199,799 + GFF2769 0.83 -1.1 199,800 - GFF2769 0.84 -0.4 199,898 + -0.2 199,898 + -2.4 199,898 + -1.7 199,899 - -0.8 199,899 - -0.1 199,899 - -0.2 199,902 + -1.4 199,906 - +0.4 199,906 - -0.2 199,907 + -1.4 199,907 + -0.3 199,908 - -1.1 199,908 - -0.2 199,908 - -0.1 200,036 + -1.1 200,141 + GFF2770 0.17 -0.2 200,141 + GFF2770 0.17 -0.2 200,141 + GFF2770 0.17 +1.2 200,142 - GFF2770 0.17 +1.3 200,142 - GFF2770 0.17 +0.3 200,142 - GFF2770 0.17 +0.4 200,142 - GFF2770 0.17 -1.9 200,216 + GFF2770 0.25 +0.8 200,216 + GFF2770 0.25 +0.8 200,216 + GFF2770 0.25 -0.4 200,217 - GFF2770 0.25 -0.6 200,217 - GFF2770 0.25 -1.1 200,217 - GFF2770 0.25 -1.2 200,396 + GFF2770 0.43 +0.8 200,396 + GFF2770 0.43 -0.3 200,396 + GFF2770 0.43 +0.1 200,396 + GFF2770 0.43 +0.3 200,397 - GFF2770 0.43 -0.7 200,397 - GFF2770 0.43 +0.4 200,397 - GFF2770 0.43 -1.0 200,579 + GFF2770 0.61 -0.2 200,579 + GFF2770 0.61 +0.2 200,579 + GFF2770 0.61 -0.0 200,579 + GFF2770 0.61 +0.4 200,579 + GFF2770 0.61 +0.1 200,579 + GFF2770 0.61 +0.8 200,580 - GFF2770 0.61 +0.1 200,580 - GFF2770 0.61 -1.5 200,580 - GFF2770 0.61 -1.3 200,580 - GFF2770 0.61 -1.8 200,580 - GFF2770 0.61 +0.1 200,580 - GFF2770 0.61 +0.6 200,580 - GFF2770 0.61 +0.2 200,580 - GFF2770 0.61 -0.1 201,420 + GFF2771 0.43 -0.0 201,420 + GFF2771 0.43 -0.1 201,421 - GFF2771 0.43 +0.5 201,421 - GFF2771 0.43 -0.6 201,592 + GFF2771 0.61 -0.6 201,593 - GFF2771 0.61 -0.5 201,593 - GFF2771 0.61 +0.2 201,594 + GFF2771 0.61 -2.8 201,594 + GFF2771 0.61 +0.1 201,594 + GFF2771 0.61 -0.9 201,594 + GFF2771 0.61 +0.6 201,594 + GFF2771 0.61 -0.1 201,594 + GFF2771 0.61 -0.3 201,594 + GFF2771 0.61 +0.9 201,594 + GFF2771 0.61 +1.1 201,594 + GFF2771 0.61 -0.9 201,595 - GFF2771 0.61 +0.8 201,595 - GFF2771 0.61 -1.8 201,595 - GFF2771 0.61 -0.4 201,595 - GFF2771 0.61 -1.0 201,595 - GFF2771 0.61 -0.3 201,595 - GFF2771 0.61 -1.0 201,595 - GFF2771 0.61 -1.1 201,595 - GFF2771 0.61 -0.1 201,595 - GFF2771 0.61 -1.5 201,595 - GFF2771 0.61 +0.1 201,621 + GFF2771 0.64 +0.6 201,621 + GFF2771 0.64 -2.2 201,621 + GFF2771 0.64 +0.2 201,622 - GFF2771 0.64 +0.1 201,622 - GFF2771 0.64 +1.0 201,622 - GFF2771 0.64 -0.4 201,622 - GFF2771 0.64 -0.9 201,622 - GFF2771 0.64 +0.1 201,622 - GFF2771 0.64 +0.3 201,645 + GFF2771 0.66 -0.1 201,645 + GFF2771 0.66 -0.2 201,646 - GFF2771 0.67 +0.1 201,646 - GFF2771 0.67 +0.0 201,666 + GFF2771 0.69 +0.1 201,666 + GFF2771 0.69 -0.2 201,667 - GFF2771 0.69 +0.4 201,711 + GFF2771 0.73 +0.3 201,712 - GFF2771 0.73 -0.6 201,774 + GFF2771 0.80 -0.0 201,774 + GFF2771 0.80 +1.4 201,774 + GFF2771 0.80 +1.3 201,775 - GFF2771 0.80 -1.1
Or see this region's nucleotide sequence