Strain Fitness in Variovorax sp. SCN45 around GFF2675

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2673 and GFF2674 overlap by 4 nucleotidesGFF2674 and GFF2675 are separated by 2 nucleotidesGFF2675 and GFF2676 overlap by 11 nucleotides GFF2673 - FIG00655207: hypothetical protein, at 95,211 to 96,191 GFF2673 GFF2674 - FIG00653968: hypothetical protein, at 96,188 to 96,583 GFF2674 GFF2675 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 96,586 to 97,722 GFF2675 GFF2676 - Dialkylrecorsinol condensing enzyme, at 97,712 to 98,770 GFF2676 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 95.680 kb on + strand, within GFF2673at 95.680 kb on + strand, within GFF2673at 95.680 kb on + strand, within GFF2673at 95.680 kb on + strand, within GFF2673at 95.680 kb on + strand, within GFF2673at 95.680 kb on + strand, within GFF2673at 95.680 kb on + strand, within GFF2673at 95.680 kb on + strand, within GFF2673at 95.680 kb on + strand, within GFF2673at 95.681 kb on - strand, within GFF2673at 95.681 kb on - strand, within GFF2673at 95.785 kb on + strand, within GFF2673at 95.785 kb on + strand, within GFF2673at 95.807 kb on - strand, within GFF2673at 95.807 kb on - strand, within GFF2673at 95.857 kb on + strand, within GFF2673at 95.869 kb on + strand, within GFF2673at 95.869 kb on + strand, within GFF2673at 96.064 kb on + strand, within GFF2673at 96.064 kb on + strand, within GFF2673at 96.357 kb on + strand, within GFF2674at 96.357 kb on + strand, within GFF2674at 96.357 kb on + strand, within GFF2674at 96.357 kb on + strand, within GFF2674at 96.357 kb on + strand, within GFF2674at 96.358 kb on - strand, within GFF2674at 96.358 kb on - strand, within GFF2674at 96.366 kb on + strand, within GFF2674at 96.519 kb on + strand, within GFF2674at 96.519 kb on + strand, within GFF2674at 96.519 kb on + strand, within GFF2674at 96.520 kb on - strand, within GFF2674at 96.587 kb on + strandat 96.588 kb on - strandat 96.588 kb on - strandat 96.602 kb on + strandat 96.602 kb on + strandat 96.602 kb on + strandat 96.602 kb on + strandat 96.602 kb on + strandat 96.602 kb on + strandat 96.603 kb on - strandat 96.603 kb on - strandat 96.603 kb on - strandat 96.603 kb on - strandat 96.603 kb on - strandat 96.704 kb on + strand, within GFF2675at 96.705 kb on - strand, within GFF2675at 96.705 kb on - strand, within GFF2675at 96.705 kb on - strand, within GFF2675at 96.705 kb on - strand, within GFF2675at 96.705 kb on - strand, within GFF2675at 96.815 kb on + strand, within GFF2675at 96.815 kb on + strand, within GFF2675at 96.907 kb on - strand, within GFF2675at 96.907 kb on - strand, within GFF2675at 96.907 kb on - strand, within GFF2675at 97.040 kb on + strand, within GFF2675at 97.040 kb on + strand, within GFF2675at 97.041 kb on - strand, within GFF2675at 97.566 kb on - strand, within GFF2675at 97.566 kb on - strand, within GFF2675at 97.722 kb on + strandat 97.723 kb on - strandat 97.723 kb on - strandat 97.781 kb on - strandat 97.852 kb on + strand, within GFF2676at 97.856 kb on + strand, within GFF2676at 97.856 kb on + strand, within GFF2676at 97.856 kb on + strand, within GFF2676at 97.875 kb on + strand, within GFF2676at 97.875 kb on + strand, within GFF2676at 97.875 kb on + strand, within GFF2676at 97.875 kb on + strand, within GFF2676at 97.875 kb on + strand, within GFF2676at 97.875 kb on + strand, within GFF2676at 97.875 kb on + strand, within GFF2676at 97.875 kb on + strand, within GFF2676at 97.876 kb on - strand, within GFF2676at 97.876 kb on - strand, within GFF2676at 97.876 kb on - strand, within GFF2676at 97.876 kb on - strand, within GFF2676at 97.876 kb on - strand, within GFF2676at 97.876 kb on - strand, within GFF2676at 97.947 kb on + strand, within GFF2676at 97.948 kb on - strand, within GFF2676at 97.948 kb on - strand, within GFF2676at 98.401 kb on - strand, within GFF2676

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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95,680 + GFF2673 0.48 -1.1
95,680 + GFF2673 0.48 -0.5
95,680 + GFF2673 0.48 -1.5
95,680 + GFF2673 0.48 -0.1
95,680 + GFF2673 0.48 +0.4
95,680 + GFF2673 0.48 +0.5
95,680 + GFF2673 0.48 +0.3
95,680 + GFF2673 0.48 -1.6
95,680 + GFF2673 0.48 -0.4
95,681 - GFF2673 0.48 +1.1
95,681 - GFF2673 0.48 -0.4
95,785 + GFF2673 0.59 -1.1
95,785 + GFF2673 0.59 +1.4
95,807 - GFF2673 0.61 -0.9
95,807 - GFF2673 0.61 -0.6
95,857 + GFF2673 0.66 -0.8
95,869 + GFF2673 0.67 -2.1
95,869 + GFF2673 0.67 -0.3
96,064 + GFF2673 0.87 +0.1
96,064 + GFF2673 0.87 +0.6
96,357 + GFF2674 0.43 -0.0
96,357 + GFF2674 0.43 -0.2
96,357 + GFF2674 0.43 +0.2
96,357 + GFF2674 0.43 -0.6
96,357 + GFF2674 0.43 -0.5
96,358 - GFF2674 0.43 +0.2
96,358 - GFF2674 0.43 +0.1
96,366 + GFF2674 0.45 +1.9
96,519 + GFF2674 0.84 +0.4
96,519 + GFF2674 0.84 -0.7
96,519 + GFF2674 0.84 +0.7
96,520 - GFF2674 0.84 -0.5
96,587 + -0.8
96,588 - -0.8
96,588 - -1.2
96,602 + -0.3
96,602 + -0.2
96,602 + -0.5
96,602 + -0.1
96,602 + +2.0
96,602 + +0.4
96,603 - -0.9
96,603 - -0.8
96,603 - +0.6
96,603 - -0.4
96,603 - +0.5
96,704 + GFF2675 0.10 -0.2
96,705 - GFF2675 0.10 -1.5
96,705 - GFF2675 0.10 +0.4
96,705 - GFF2675 0.10 -0.8
96,705 - GFF2675 0.10 +0.6
96,705 - GFF2675 0.10 -0.8
96,815 + GFF2675 0.20 +1.6
96,815 + GFF2675 0.20 -1.9
96,907 - GFF2675 0.28 -0.2
96,907 - GFF2675 0.28 +0.6
96,907 - GFF2675 0.28 -1.0
97,040 + GFF2675 0.40 -0.8
97,040 + GFF2675 0.40 +2.0
97,041 - GFF2675 0.40 +0.1
97,566 - GFF2675 0.86 -1.4
97,566 - GFF2675 0.86 -0.5
97,722 + -0.5
97,723 - +0.3
97,723 - -0.4
97,781 - +0.1
97,852 + GFF2676 0.13 -1.0
97,856 + GFF2676 0.14 +0.5
97,856 + GFF2676 0.14 -0.3
97,856 + GFF2676 0.14 -0.4
97,875 + GFF2676 0.15 -1.2
97,875 + GFF2676 0.15 +0.4
97,875 + GFF2676 0.15 +0.9
97,875 + GFF2676 0.15 -0.6
97,875 + GFF2676 0.15 +0.3
97,875 + GFF2676 0.15 -0.2
97,875 + GFF2676 0.15 -0.9
97,875 + GFF2676 0.15 +0.5
97,876 - GFF2676 0.15 -1.4
97,876 - GFF2676 0.15 -1.3
97,876 - GFF2676 0.15 -0.4
97,876 - GFF2676 0.15 -0.8
97,876 - GFF2676 0.15 -1.7
97,876 - GFF2676 0.15 -0.6
97,947 + GFF2676 0.22 -0.2
97,948 - GFF2676 0.22 -0.2
97,948 - GFF2676 0.22 -0.0
98,401 - GFF2676 0.65 +0.8

Or see this region's nucleotide sequence