Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2596 and GFF2597 overlap by 4 nucleotides GFF2597 and GFF2598 overlap by 4 nucleotides GFF2598 and GFF2599 are separated by 16 nucleotides GFF2599 and GFF2600 are separated by 28 nucleotides
GFF2596 - Multidrug resistance transporter, Bcr/CflA family, at 1,931 to 3,151
GFF2596
GFF2597 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 3,148 to 3,582
GFF2597
GFF2598 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 3,579 to 4,793
GFF2598
GFF2599 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 4,810 to 5,643
GFF2599
GFF2600 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 5,672 to 6,595
GFF2600
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2.604 kb on + strand, within GFF2596 at 2.604 kb on + strand, within GFF2596 at 2.605 kb on - strand, within GFF2596 at 2.634 kb on + strand, within GFF2596 at 2.634 kb on + strand, within GFF2596 at 2.635 kb on - strand, within GFF2596 at 2.635 kb on - strand, within GFF2596 at 2.635 kb on - strand, within GFF2596 at 2.635 kb on - strand, within GFF2596 at 2.898 kb on + strand, within GFF2596 at 2.898 kb on + strand, within GFF2596 at 2.898 kb on + strand, within GFF2596 at 2.898 kb on + strand, within GFF2596 at 2.898 kb on + strand, within GFF2596 at 2.898 kb on + strand, within GFF2596 at 2.898 kb on + strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 2.899 kb on - strand, within GFF2596 at 3.054 kb on + strand at 3.054 kb on + strand at 3.054 kb on + strand at 3.054 kb on + strand at 3.054 kb on + strand at 3.055 kb on - strand at 3.055 kb on - strand at 3.055 kb on - strand at 3.055 kb on - strand at 3.055 kb on - strand at 3.055 kb on - strand at 3.055 kb on - strand at 3.248 kb on + strand, within GFF2597 at 3.248 kb on + strand, within GFF2597 at 3.248 kb on + strand, within GFF2597 at 3.249 kb on - strand, within GFF2597 at 3.386 kb on + strand, within GFF2597 at 3.386 kb on + strand, within GFF2597 at 3.387 kb on - strand, within GFF2597 at 3.387 kb on - strand, within GFF2597 at 3.551 kb on + strand at 3.551 kb on + strand at 3.551 kb on + strand at 3.551 kb on + strand at 3.552 kb on - strand at 3.552 kb on - strand at 3.552 kb on - strand at 4.022 kb on - strand, within GFF2598 at 4.022 kb on - strand, within GFF2598 at 4.022 kb on - strand, within GFF2598 at 4.022 kb on - strand, within GFF2598 at 4.022 kb on - strand, within GFF2598 at 4.504 kb on + strand, within GFF2598 at 4.504 kb on + strand, within GFF2598 at 4.505 kb on - strand, within GFF2598 at 4.505 kb on - strand, within GFF2598 at 4.505 kb on - strand, within GFF2598 at 4.787 kb on + strand at 4.788 kb on - strand at 4.788 kb on - strand at 4.814 kb on + strand at 4.815 kb on - strand at 4.815 kb on - strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.838 kb on - strand at 4.838 kb on - strand at 4.838 kb on - strand at 4.838 kb on - strand at 4.838 kb on - strand at 4.880 kb on + strand at 4.881 kb on - strand at 4.964 kb on + strand, within GFF2599 at 4.964 kb on + strand, within GFF2599 at 4.965 kb on - strand, within GFF2599 at 4.965 kb on - strand, within GFF2599 at 5.081 kb on + strand, within GFF2599 at 5.126 kb on + strand, within GFF2599 at 5.126 kb on + strand, within GFF2599 at 5.126 kb on + strand, within GFF2599 at 5.501 kb on + strand, within GFF2599 at 5.502 kb on - strand, within GFF2599 at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.693 kb on - strand at 5.695 kb on - strand at 5.737 kb on - strand at 5.737 kb on - strand at 5.737 kb on - strand at 5.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 2,604 + GFF2596 0.55 -0.2 2,604 + GFF2596 0.55 +0.6 2,605 - GFF2596 0.55 +1.1 2,634 + GFF2596 0.58 -0.0 2,634 + GFF2596 0.58 +0.4 2,635 - GFF2596 0.58 -1.5 2,635 - GFF2596 0.58 +0.1 2,635 - GFF2596 0.58 -0.6 2,635 - GFF2596 0.58 -0.2 2,898 + GFF2596 0.79 -0.4 2,898 + GFF2596 0.79 +0.3 2,898 + GFF2596 0.79 -0.4 2,898 + GFF2596 0.79 -0.8 2,898 + GFF2596 0.79 -0.8 2,898 + GFF2596 0.79 -1.2 2,898 + GFF2596 0.79 +0.3 2,899 - GFF2596 0.79 -0.9 2,899 - GFF2596 0.79 +0.1 2,899 - GFF2596 0.79 -1.5 2,899 - GFF2596 0.79 -0.0 2,899 - GFF2596 0.79 -0.7 2,899 - GFF2596 0.79 +0.4 2,899 - GFF2596 0.79 -1.0 2,899 - GFF2596 0.79 +0.1 2,899 - GFF2596 0.79 +0.6 2,899 - GFF2596 0.79 -0.1 2,899 - GFF2596 0.79 +0.0 3,054 + -1.7 3,054 + -0.5 3,054 + -0.4 3,054 + -0.0 3,054 + -1.0 3,055 - -0.1 3,055 - -0.4 3,055 - +2.4 3,055 - +0.3 3,055 - -0.3 3,055 - +1.0 3,055 - -1.2 3,248 + GFF2597 0.23 -0.3 3,248 + GFF2597 0.23 -1.5 3,248 + GFF2597 0.23 +0.6 3,249 - GFF2597 0.23 +0.1 3,386 + GFF2597 0.55 +0.4 3,386 + GFF2597 0.55 -0.4 3,387 - GFF2597 0.55 -0.2 3,387 - GFF2597 0.55 -0.0 3,551 + -0.7 3,551 + -0.4 3,551 + -0.6 3,551 + -1.2 3,552 - -0.9 3,552 - +0.6 3,552 - -0.3 4,022 - GFF2598 0.36 -1.8 4,022 - GFF2598 0.36 -1.4 4,022 - GFF2598 0.36 -0.7 4,022 - GFF2598 0.36 -1.2 4,022 - GFF2598 0.36 -0.1 4,504 + GFF2598 0.76 -0.9 4,504 + GFF2598 0.76 -0.1 4,505 - GFF2598 0.76 -0.1 4,505 - GFF2598 0.76 +0.2 4,505 - GFF2598 0.76 +0.1 4,787 + -0.9 4,788 - -0.4 4,788 - +0.3 4,814 + -1.2 4,815 - -0.1 4,815 - +0.5 4,837 + +0.8 4,837 + +0.4 4,837 + -0.1 4,837 + -0.2 4,837 + -0.8 4,837 + +0.8 4,837 + -3.2 4,837 + +0.3 4,838 - -0.3 4,838 - -0.5 4,838 - -0.7 4,838 - +2.6 4,838 - -0.1 4,880 + -0.5 4,881 - +1.0 4,964 + GFF2599 0.18 -0.5 4,964 + GFF2599 0.18 +1.1 4,965 - GFF2599 0.19 -2.3 4,965 - GFF2599 0.19 +0.1 5,081 + GFF2599 0.32 +0.9 5,126 + GFF2599 0.38 -0.0 5,126 + GFF2599 0.38 -0.4 5,126 + GFF2599 0.38 -0.3 5,501 + GFF2599 0.83 -0.9 5,502 - GFF2599 0.83 +0.6 5,570 + +0.5 5,570 + +0.2 5,570 + +0.4 5,570 + -0.3 5,570 + +1.2 5,570 + -0.8 5,570 + -0.2 5,570 + -0.0 5,570 + +0.4 5,570 + -0.4 5,570 + -0.1 5,570 + -0.8 5,570 + -0.7 5,571 - +0.3 5,571 - -0.1 5,571 - -0.2 5,571 - -1.2 5,571 - -1.1 5,571 - +1.1 5,571 - -0.3 5,571 - -0.1 5,571 - -0.5 5,571 - +1.4 5,571 - -0.4 5,571 - +0.0 5,571 - -0.5 5,693 - +1.1 5,695 - -0.8 5,737 - -0.5 5,737 - -0.1 5,737 - +1.9 5,737 - -0.8
Or see this region's nucleotide sequence