Strain Fitness in Variovorax sp. SCN45 around GFF2597

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2596 and GFF2597 overlap by 4 nucleotidesGFF2597 and GFF2598 overlap by 4 nucleotides GFF2596 - Multidrug resistance transporter, Bcr/CflA family, at 1,931 to 3,151 GFF2596 GFF2597 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 3,148 to 3,582 GFF2597 GFF2598 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 3,579 to 4,793 GFF2598 Position (kb) 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 2.208 kb on + strand, within GFF2596at 2.208 kb on + strand, within GFF2596at 2.208 kb on + strand, within GFF2596at 2.208 kb on + strand, within GFF2596at 2.208 kb on + strand, within GFF2596at 2.208 kb on + strand, within GFF2596at 2.209 kb on - strand, within GFF2596at 2.209 kb on - strand, within GFF2596at 2.209 kb on - strand, within GFF2596at 2.209 kb on - strand, within GFF2596at 2.209 kb on - strand, within GFF2596at 2.209 kb on - strand, within GFF2596at 2.209 kb on - strand, within GFF2596at 2.332 kb on - strand, within GFF2596at 2.332 kb on - strand, within GFF2596at 2.373 kb on + strand, within GFF2596at 2.373 kb on + strand, within GFF2596at 2.373 kb on + strand, within GFF2596at 2.373 kb on + strand, within GFF2596at 2.373 kb on + strand, within GFF2596at 2.374 kb on - strand, within GFF2596at 2.374 kb on - strand, within GFF2596at 2.430 kb on + strand, within GFF2596at 2.439 kb on + strand, within GFF2596at 2.439 kb on + strand, within GFF2596at 2.439 kb on + strand, within GFF2596at 2.439 kb on + strand, within GFF2596at 2.440 kb on - strand, within GFF2596at 2.440 kb on - strand, within GFF2596at 2.440 kb on - strand, within GFF2596at 2.440 kb on - strand, within GFF2596at 2.440 kb on - strand, within GFF2596at 2.440 kb on - strand, within GFF2596at 2.440 kb on - strand, within GFF2596at 2.440 kb on - strand, within GFF2596at 2.481 kb on + strand, within GFF2596at 2.481 kb on + strand, within GFF2596at 2.482 kb on - strand, within GFF2596at 2.482 kb on - strand, within GFF2596at 2.604 kb on + strand, within GFF2596at 2.604 kb on + strand, within GFF2596at 2.605 kb on - strand, within GFF2596at 2.634 kb on + strand, within GFF2596at 2.634 kb on + strand, within GFF2596at 2.635 kb on - strand, within GFF2596at 2.635 kb on - strand, within GFF2596at 2.635 kb on - strand, within GFF2596at 2.635 kb on - strand, within GFF2596at 2.898 kb on + strand, within GFF2596at 2.898 kb on + strand, within GFF2596at 2.898 kb on + strand, within GFF2596at 2.898 kb on + strand, within GFF2596at 2.898 kb on + strand, within GFF2596at 2.898 kb on + strand, within GFF2596at 2.898 kb on + strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 2.899 kb on - strand, within GFF2596at 3.054 kb on + strandat 3.054 kb on + strandat 3.054 kb on + strandat 3.054 kb on + strandat 3.054 kb on + strandat 3.055 kb on - strandat 3.055 kb on - strandat 3.055 kb on - strandat 3.055 kb on - strandat 3.055 kb on - strandat 3.055 kb on - strandat 3.055 kb on - strandat 3.248 kb on + strand, within GFF2597at 3.248 kb on + strand, within GFF2597at 3.248 kb on + strand, within GFF2597at 3.249 kb on - strand, within GFF2597at 3.386 kb on + strand, within GFF2597at 3.386 kb on + strand, within GFF2597at 3.387 kb on - strand, within GFF2597at 3.387 kb on - strand, within GFF2597at 3.551 kb on + strandat 3.551 kb on + strandat 3.551 kb on + strandat 3.551 kb on + strandat 3.552 kb on - strandat 3.552 kb on - strandat 3.552 kb on - strandat 4.022 kb on - strand, within GFF2598at 4.022 kb on - strand, within GFF2598at 4.022 kb on - strand, within GFF2598at 4.022 kb on - strand, within GFF2598at 4.022 kb on - strand, within GFF2598at 4.504 kb on + strand, within GFF2598at 4.504 kb on + strand, within GFF2598at 4.505 kb on - strand, within GFF2598at 4.505 kb on - strand, within GFF2598at 4.505 kb on - strand, within GFF2598

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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2,208 + GFF2596 0.23 -0.1
2,208 + GFF2596 0.23 +0.9
2,208 + GFF2596 0.23 -0.4
2,208 + GFF2596 0.23 +0.6
2,208 + GFF2596 0.23 +0.3
2,208 + GFF2596 0.23 +0.9
2,209 - GFF2596 0.23 +2.1
2,209 - GFF2596 0.23 +1.1
2,209 - GFF2596 0.23 -0.2
2,209 - GFF2596 0.23 -0.7
2,209 - GFF2596 0.23 -1.2
2,209 - GFF2596 0.23 +0.1
2,209 - GFF2596 0.23 +0.1
2,332 - GFF2596 0.33 +0.6
2,332 - GFF2596 0.33 -0.4
2,373 + GFF2596 0.36 -0.3
2,373 + GFF2596 0.36 +0.3
2,373 + GFF2596 0.36 -0.3
2,373 + GFF2596 0.36 +1.1
2,373 + GFF2596 0.36 -1.3
2,374 - GFF2596 0.36 -0.4
2,374 - GFF2596 0.36 -0.1
2,430 + GFF2596 0.41 -0.6
2,439 + GFF2596 0.42 +1.3
2,439 + GFF2596 0.42 +0.5
2,439 + GFF2596 0.42 -2.3
2,439 + GFF2596 0.42 -0.1
2,440 - GFF2596 0.42 -0.8
2,440 - GFF2596 0.42 -0.8
2,440 - GFF2596 0.42 +0.6
2,440 - GFF2596 0.42 -0.4
2,440 - GFF2596 0.42 -1.1
2,440 - GFF2596 0.42 +0.1
2,440 - GFF2596 0.42 +1.4
2,440 - GFF2596 0.42 +0.0
2,481 + GFF2596 0.45 +0.3
2,481 + GFF2596 0.45 -0.8
2,482 - GFF2596 0.45 -0.4
2,482 - GFF2596 0.45 -2.3
2,604 + GFF2596 0.55 -0.2
2,604 + GFF2596 0.55 +0.6
2,605 - GFF2596 0.55 +1.1
2,634 + GFF2596 0.58 -0.0
2,634 + GFF2596 0.58 +0.4
2,635 - GFF2596 0.58 -1.5
2,635 - GFF2596 0.58 +0.1
2,635 - GFF2596 0.58 -0.6
2,635 - GFF2596 0.58 -0.2
2,898 + GFF2596 0.79 -0.4
2,898 + GFF2596 0.79 +0.3
2,898 + GFF2596 0.79 -0.4
2,898 + GFF2596 0.79 -0.8
2,898 + GFF2596 0.79 -0.8
2,898 + GFF2596 0.79 -1.2
2,898 + GFF2596 0.79 +0.3
2,899 - GFF2596 0.79 -0.9
2,899 - GFF2596 0.79 +0.1
2,899 - GFF2596 0.79 -1.5
2,899 - GFF2596 0.79 -0.0
2,899 - GFF2596 0.79 -0.7
2,899 - GFF2596 0.79 +0.4
2,899 - GFF2596 0.79 -1.0
2,899 - GFF2596 0.79 +0.1
2,899 - GFF2596 0.79 +0.6
2,899 - GFF2596 0.79 -0.1
2,899 - GFF2596 0.79 +0.0
3,054 + -1.7
3,054 + -0.5
3,054 + -0.4
3,054 + -0.0
3,054 + -1.0
3,055 - -0.1
3,055 - -0.4
3,055 - +2.4
3,055 - +0.3
3,055 - -0.3
3,055 - +1.0
3,055 - -1.2
3,248 + GFF2597 0.23 -0.3
3,248 + GFF2597 0.23 -1.5
3,248 + GFF2597 0.23 +0.6
3,249 - GFF2597 0.23 +0.1
3,386 + GFF2597 0.55 +0.4
3,386 + GFF2597 0.55 -0.4
3,387 - GFF2597 0.55 -0.2
3,387 - GFF2597 0.55 -0.0
3,551 + -0.7
3,551 + -0.4
3,551 + -0.6
3,551 + -1.2
3,552 - -0.9
3,552 - +0.6
3,552 - -0.3
4,022 - GFF2598 0.36 -1.8
4,022 - GFF2598 0.36 -1.4
4,022 - GFF2598 0.36 -0.7
4,022 - GFF2598 0.36 -1.2
4,022 - GFF2598 0.36 -0.1
4,504 + GFF2598 0.76 -0.9
4,504 + GFF2598 0.76 -0.1
4,505 - GFF2598 0.76 -0.1
4,505 - GFF2598 0.76 +0.2
4,505 - GFF2598 0.76 +0.1

Or see this region's nucleotide sequence