Strain Fitness in Variovorax sp. SCN45 around GFF1877

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1874 and GFF1876 are separated by 12 nucleotidesGFF1876 and GFF1877 are separated by 9 nucleotidesGFF1877 and GFF1878 are separated by 33 nucleotidesGFF1878 and GFF1879 are separated by 31 nucleotides GFF1874 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 548,625 to 549,581 GFF1874 GFF1876 - Dihydrodipicolinate synthase family, at 549,594 to 550,487 GFF1876 GFF1877 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 550,497 to 551,279 GFF1877 GFF1878 - Bll6165 protein, at 551,313 to 551,723 GFF1878 GFF1879 - dicarboxylic acid transporter PcaT, at 551,755 to 553,101 GFF1879 Position (kb) 550 551 552Strain fitness (log2 ratio) -2 -1 0 1 2at 549.615 kb on + strandat 549.615 kb on + strandat 549.615 kb on + strandat 549.615 kb on + strandat 549.615 kb on + strandat 549.616 kb on - strandat 549.616 kb on - strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.918 kb on + strand, within GFF1876at 549.919 kb on - strand, within GFF1876at 549.919 kb on - strand, within GFF1876at 549.954 kb on + strand, within GFF1876at 549.954 kb on + strand, within GFF1876at 549.955 kb on - strand, within GFF1876at 549.955 kb on - strand, within GFF1876at 549.996 kb on + strand, within GFF1876at 549.996 kb on + strand, within GFF1876at 549.996 kb on + strand, within GFF1876at 549.996 kb on + strand, within GFF1876at 549.997 kb on - strand, within GFF1876at 549.997 kb on - strand, within GFF1876at 550.074 kb on + strand, within GFF1876at 550.075 kb on - strand, within GFF1876at 550.075 kb on - strand, within GFF1876at 550.075 kb on - strand, within GFF1876at 550.176 kb on + strand, within GFF1876at 550.176 kb on + strand, within GFF1876at 550.177 kb on - strand, within GFF1876at 550.177 kb on - strand, within GFF1876at 550.177 kb on - strand, within GFF1876at 550.177 kb on - strand, within GFF1876at 550.177 kb on - strand, within GFF1876at 550.245 kb on + strand, within GFF1876at 550.246 kb on - strand, within GFF1876at 550.246 kb on - strand, within GFF1876at 550.335 kb on + strand, within GFF1876at 550.335 kb on + strand, within GFF1876at 550.335 kb on + strand, within GFF1876at 550.335 kb on + strand, within GFF1876at 550.336 kb on - strand, within GFF1876at 550.336 kb on - strand, within GFF1876at 550.336 kb on - strand, within GFF1876at 550.336 kb on - strand, within GFF1876at 550.490 kb on + strandat 550.490 kb on + strandat 550.490 kb on + strandat 550.491 kb on - strandat 550.951 kb on - strand, within GFF1877at 551.287 kb on + strandat 551.287 kb on + strandat 551.295 kb on - strandat 551.539 kb on - strand, within GFF1878at 551.550 kb on + strand, within GFF1878at 551.550 kb on + strand, within GFF1878at 551.551 kb on - strand, within GFF1878at 551.756 kb on + strandat 551.756 kb on + strandat 551.756 kb on + strandat 551.757 kb on - strandat 551.757 kb on - strandat 551.757 kb on - strandat 551.757 kb on - strandat 551.757 kb on - strandat 551.774 kb on + strandat 551.775 kb on - strandat 551.775 kb on - strandat 551.775 kb on - strandat 551.775 kb on - strandat 551.837 kb on + strandat 551.837 kb on + strandat 551.837 kb on + strandat 551.838 kb on - strandat 551.838 kb on - strandat 551.838 kb on - strandat 551.843 kb on + strandat 551.843 kb on + strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.849 kb on + strandat 551.849 kb on + strandat 551.850 kb on - strandat 551.850 kb on - strandat 551.850 kb on - strandat 551.850 kb on - strandat 551.889 kb on - strandat 551.889 kb on - strandat 552.002 kb on + strand, within GFF1879at 552.002 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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549,615 + -0.2
549,615 + -0.3
549,615 + +0.3
549,615 + -0.7
549,615 + -0.5
549,616 - +0.6
549,616 - -0.2
549,678 + +0.2
549,678 + -0.2
549,678 + +0.2
549,678 + -0.9
549,918 + GFF1876 0.36 -0.7
549,919 - GFF1876 0.36 +1.6
549,919 - GFF1876 0.36 +0.6
549,954 + GFF1876 0.40 -0.5
549,954 + GFF1876 0.40 -0.1
549,955 - GFF1876 0.40 +0.2
549,955 - GFF1876 0.40 -0.4
549,996 + GFF1876 0.45 +0.8
549,996 + GFF1876 0.45 +0.0
549,996 + GFF1876 0.45 -0.9
549,996 + GFF1876 0.45 -0.8
549,997 - GFF1876 0.45 -2.6
549,997 - GFF1876 0.45 -0.1
550,074 + GFF1876 0.54 -0.2
550,075 - GFF1876 0.54 +0.7
550,075 - GFF1876 0.54 -0.2
550,075 - GFF1876 0.54 +0.2
550,176 + GFF1876 0.65 -0.5
550,176 + GFF1876 0.65 +1.1
550,177 - GFF1876 0.65 +0.1
550,177 - GFF1876 0.65 -0.2
550,177 - GFF1876 0.65 -1.0
550,177 - GFF1876 0.65 -0.6
550,177 - GFF1876 0.65 +0.6
550,245 + GFF1876 0.73 -1.0
550,246 - GFF1876 0.73 +1.8
550,246 - GFF1876 0.73 -0.8
550,335 + GFF1876 0.83 +0.6
550,335 + GFF1876 0.83 +0.2
550,335 + GFF1876 0.83 +1.3
550,335 + GFF1876 0.83 -0.6
550,336 - GFF1876 0.83 -0.4
550,336 - GFF1876 0.83 -0.5
550,336 - GFF1876 0.83 -0.1
550,336 - GFF1876 0.83 -0.4
550,490 + +0.8
550,490 + -1.5
550,490 + -0.0
550,491 - -0.1
550,951 - GFF1877 0.58 -0.3
551,287 + -0.4
551,287 + +1.4
551,295 - -1.1
551,539 - GFF1878 0.55 -0.5
551,550 + GFF1878 0.58 +0.2
551,550 + GFF1878 0.58 -0.5
551,551 - GFF1878 0.58 -1.3
551,756 + -1.3
551,756 + -0.0
551,756 + -1.3
551,757 - -1.3
551,757 - -0.8
551,757 - -0.1
551,757 - +0.1
551,757 - +2.2
551,774 + -0.6
551,775 - -0.6
551,775 - -1.2
551,775 - +0.8
551,775 - +0.2
551,837 + -0.5
551,837 + -0.2
551,837 + +0.2
551,838 - -0.2
551,838 - -0.0
551,838 - +0.5
551,843 + -1.3
551,843 + +0.4
551,844 - -0.2
551,844 - -2.3
551,844 - -1.2
551,844 - -1.6
551,844 - -1.0
551,844 - +0.7
551,849 + -0.3
551,849 + -1.0
551,850 - -1.3
551,850 - -0.7
551,850 - +0.3
551,850 - -0.1
551,889 - -0.4
551,889 - +0.1
552,002 + GFF1879 0.18 -0.1
552,002 + GFF1879 0.18 -0.2
552,185 + GFF1879 0.32 -0.5
552,185 + GFF1879 0.32 -1.1
552,185 + GFF1879 0.32 -0.2
552,185 + GFF1879 0.32 +2.2
552,185 + GFF1879 0.32 +0.0
552,185 + GFF1879 0.32 -0.5
552,185 + GFF1879 0.32 -0.2
552,185 + GFF1879 0.32 -0.5
552,185 + GFF1879 0.32 +0.1
552,185 + GFF1879 0.32 +0.8
552,185 + GFF1879 0.32 -0.5
552,186 - GFF1879 0.32 +2.4
552,186 - GFF1879 0.32 -0.4
552,186 - GFF1879 0.32 -0.8
552,186 - GFF1879 0.32 -0.9
552,186 - GFF1879 0.32 -0.5
552,186 - GFF1879 0.32 -0.6
552,186 - GFF1879 0.32 +0.5
552,186 - GFF1879 0.32 +1.4
552,186 - GFF1879 0.32 +0.3
552,186 - GFF1879 0.32 +0.5
552,186 - GFF1879 0.32 +0.0
552,186 - GFF1879 0.32 -0.2
552,186 - GFF1879 0.32 +1.0
552,267 - GFF1879 0.38 -0.3
552,267 - GFF1879 0.38 -2.0
552,267 - GFF1879 0.38 +0.1
552,267 - GFF1879 0.38 -0.1
552,267 - GFF1879 0.38 -1.1
552,267 - GFF1879 0.38 +0.5
552,267 - GFF1879 0.38 -0.2
552,267 - GFF1879 0.38 +0.3

Or see this region's nucleotide sequence