Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1832 and GFF1833 are separated by 37 nucleotides GFF1833 and GFF1834 are separated by 17 nucleotides
GFF1832 - TRAP transporter solute receptor, unknown substrate 3, at 497,435 to 498,490
GFF1832
GFF1833 - (S)-mandelate dehydrogenase (EC 1.1.99.31), at 498,528 to 499,778
GFF1833
GFF1834 - BUG/TctC family periplasmic protein, at 499,796 to 500,782
GFF1834
Position (kb) 498
499
500 Strain fitness (log2 ratio) -2
-1
0
1 at 497.589 kb on + strand, within GFF1832 at 497.590 kb on - strand, within GFF1832 at 497.730 kb on + strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.769 kb on + strand, within GFF1832 at 497.769 kb on + strand, within GFF1832 at 497.770 kb on - strand, within GFF1832 at 497.770 kb on - strand, within GFF1832 at 497.791 kb on - strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.901 kb on - strand, within GFF1832 at 497.901 kb on - strand, within GFF1832 at 498.072 kb on + strand, within GFF1832 at 498.189 kb on + strand, within GFF1832 at 498.189 kb on + strand, within GFF1832 at 498.266 kb on + strand, within GFF1832 at 498.529 kb on + strand at 498.529 kb on + strand at 498.529 kb on + strand at 498.550 kb on + strand at 499.387 kb on + strand, within GFF1833 at 499.388 kb on - strand, within GFF1833 at 499.388 kb on - strand, within GFF1833 at 499.388 kb on - strand, within GFF1833 at 499.388 kb on - strand, within GFF1833 at 499.705 kb on + strand at 499.706 kb on - strand at 500.004 kb on + strand, within GFF1834 at 500.005 kb on - strand, within GFF1834 at 500.164 kb on - strand, within GFF1834 at 500.219 kb on + strand, within GFF1834 at 500.220 kb on - strand, within GFF1834 at 500.220 kb on - strand, within GFF1834 at 500.455 kb on - strand, within GFF1834 at 500.506 kb on - strand, within GFF1834
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 497,589 + GFF1832 0.15 +0.8 497,590 - GFF1832 0.15 -0.3 497,730 + GFF1832 0.28 -1.0 497,731 - GFF1832 0.28 -0.7 497,731 - GFF1832 0.28 +1.1 497,731 - GFF1832 0.28 +0.2 497,769 + GFF1832 0.32 -1.2 497,769 + GFF1832 0.32 -1.5 497,770 - GFF1832 0.32 +0.1 497,770 - GFF1832 0.32 -0.5 497,791 - GFF1832 0.34 -1.7 497,900 + GFF1832 0.44 -0.3 497,900 + GFF1832 0.44 -0.7 497,900 + GFF1832 0.44 -0.1 497,901 - GFF1832 0.44 -0.4 497,901 - GFF1832 0.44 -1.9 498,072 + GFF1832 0.60 -2.7 498,189 + GFF1832 0.71 -0.4 498,189 + GFF1832 0.71 -0.3 498,266 + GFF1832 0.79 -0.9 498,529 + -0.0 498,529 + -0.0 498,529 + +0.0 498,550 + -0.5 499,387 + GFF1833 0.69 -0.8 499,388 - GFF1833 0.69 +0.5 499,388 - GFF1833 0.69 -0.2 499,388 - GFF1833 0.69 +0.8 499,388 - GFF1833 0.69 +0.1 499,705 + +0.5 499,706 - -0.0 500,004 + GFF1834 0.21 -0.8 500,005 - GFF1834 0.21 -0.1 500,164 - GFF1834 0.37 -0.5 500,219 + GFF1834 0.43 +0.7 500,220 - GFF1834 0.43 -1.5 500,220 - GFF1834 0.43 +1.2 500,455 - GFF1834 0.67 +0.4 500,506 - GFF1834 0.72 -0.8
Or see this region's nucleotide sequence