Strain Fitness in Variovorax sp. SCN45 around GFF1811

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1810 and GFF1811 are separated by 184 nucleotidesGFF1811 and GFF1812 overlap by 4 nucleotidesGFF1812 and GFF1813 are separated by 36 nucleotides GFF1810 - Histidinol phosphatase and related hydrolases of the PHP family, at 472,885 to 474,567 GFF1810 GFF1811 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 474,752 to 476,101 GFF1811 GFF1812 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 476,098 to 476,751 GFF1812 GFF1813 - Acetylornithine deacetylase-like protein Acry_1162, at 476,788 to 478,014 GFF1813 Position (kb) 474 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.820 kb on - strand, within GFF1810at 473.820 kb on - strand, within GFF1810at 473.820 kb on - strand, within GFF1810at 473.858 kb on + strand, within GFF1810at 473.858 kb on + strand, within GFF1810at 473.858 kb on + strand, within GFF1810at 473.858 kb on + strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.873 kb on + strand, within GFF1810at 473.873 kb on + strand, within GFF1810at 473.873 kb on + strand, within GFF1810at 473.874 kb on - strand, within GFF1810at 474.002 kb on + strand, within GFF1810at 474.002 kb on + strand, within GFF1810at 474.002 kb on + strand, within GFF1810at 474.003 kb on - strand, within GFF1810at 474.003 kb on - strand, within GFF1810at 474.003 kb on - strand, within GFF1810at 474.003 kb on - strand, within GFF1810at 474.129 kb on - strand, within GFF1810at 474.129 kb on - strand, within GFF1810at 474.129 kb on - strand, within GFF1810at 474.129 kb on - strand, within GFF1810at 474.170 kb on + strand, within GFF1810at 474.170 kb on + strand, within GFF1810at 474.171 kb on - strand, within GFF1810at 474.171 kb on - strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.733 kb on + strandat 474.733 kb on + strandat 474.733 kb on + strandat 474.733 kb on + strandat 474.734 kb on - strandat 474.735 kb on + strandat 474.735 kb on + strandat 474.735 kb on + strandat 474.736 kb on - strandat 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 475.148 kb on + strand, within GFF1811at 475.149 kb on - strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.173 kb on - strand, within GFF1811at 475.173 kb on - strand, within GFF1811at 475.173 kb on - strand, within GFF1811at 475.214 kb on + strand, within GFF1811at 475.214 kb on + strand, within GFF1811at 475.215 kb on - strand, within GFF1811at 475.215 kb on - strand, within GFF1811at 475.215 kb on - strand, within GFF1811at 475.289 kb on + strand, within GFF1811at 475.289 kb on + strand, within GFF1811at 475.289 kb on + strand, within GFF1811at 475.290 kb on - strand, within GFF1811at 475.290 kb on - strand, within GFF1811at 475.290 kb on - strand, within GFF1811at 475.290 kb on - strand, within GFF1811at 475.337 kb on + strand, within GFF1811at 475.338 kb on - strand, within GFF1811at 475.338 kb on - strand, within GFF1811at 475.745 kb on + strand, within GFF1811at 475.745 kb on + strand, within GFF1811at 475.745 kb on + strand, within GFF1811at 475.746 kb on - strand, within GFF1811at 475.746 kb on - strand, within GFF1811at 475.826 kb on + strand, within GFF1811at 475.917 kb on - strand, within GFF1811at 475.917 kb on - strand, within GFF1811at 475.917 kb on - strand, within GFF1811at 475.917 kb on - strand, within GFF1811at 476.048 kb on + strandat 476.048 kb on + strandat 476.049 kb on - strandat 476.429 kb on - strand, within GFF1812at 476.429 kb on - strand, within GFF1812at 476.429 kb on - strand, within GFF1812at 476.429 kb on - strand, within GFF1812at 476.458 kb on + strand, within GFF1812at 476.458 kb on + strand, within GFF1812at 476.458 kb on + strand, within GFF1812at 476.459 kb on - strand, within GFF1812at 476.648 kb on - strand, within GFF1812at 476.852 kb on - strandat 476.912 kb on + strand, within GFF1813at 476.912 kb on + strand, within GFF1813at 476.913 kb on - strand, within GFF1813at 476.942 kb on + strand, within GFF1813at 476.942 kb on + strand, within GFF1813at 476.943 kb on - strand, within GFF1813at 476.943 kb on - strand, within GFF1813at 476.943 kb on - strand, within GFF1813at 476.960 kb on + strand, within GFF1813at 476.960 kb on + strand, within GFF1813at 476.960 kb on + strand, within GFF1813at 476.960 kb on + strand, within GFF1813

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
remove
473,819 + GFF1810 0.55 -0.4
473,819 + GFF1810 0.55 -0.2
473,819 + GFF1810 0.55 +0.0
473,819 + GFF1810 0.55 -0.1
473,819 + GFF1810 0.55 -0.5
473,819 + GFF1810 0.55 -0.1
473,820 - GFF1810 0.56 -0.4
473,820 - GFF1810 0.56 -0.5
473,820 - GFF1810 0.56 +2.8
473,858 + GFF1810 0.58 -0.9
473,858 + GFF1810 0.58 +0.4
473,858 + GFF1810 0.58 -0.3
473,858 + GFF1810 0.58 -2.2
473,859 - GFF1810 0.58 -0.2
473,859 - GFF1810 0.58 +2.4
473,859 - GFF1810 0.58 -0.9
473,859 - GFF1810 0.58 +0.6
473,859 - GFF1810 0.58 -0.5
473,859 - GFF1810 0.58 -0.9
473,859 - GFF1810 0.58 -0.2
473,873 + GFF1810 0.59 +0.1
473,873 + GFF1810 0.59 -0.7
473,873 + GFF1810 0.59 -0.4
473,874 - GFF1810 0.59 -0.1
474,002 + GFF1810 0.66 -0.7
474,002 + GFF1810 0.66 -1.0
474,002 + GFF1810 0.66 +0.5
474,003 - GFF1810 0.66 -0.2
474,003 - GFF1810 0.66 +1.4
474,003 - GFF1810 0.66 +1.1
474,003 - GFF1810 0.66 -0.4
474,129 - GFF1810 0.74 +0.1
474,129 - GFF1810 0.74 -0.4
474,129 - GFF1810 0.74 +0.1
474,129 - GFF1810 0.74 +0.8
474,170 + GFF1810 0.76 +1.8
474,170 + GFF1810 0.76 +0.4
474,171 - GFF1810 0.76 -0.8
474,171 - GFF1810 0.76 -1.6
474,230 + GFF1810 0.80 -1.2
474,230 + GFF1810 0.80 -1.5
474,230 + GFF1810 0.80 +0.5
474,230 + GFF1810 0.80 -0.3
474,230 + GFF1810 0.80 -1.5
474,231 - GFF1810 0.80 -1.1
474,231 - GFF1810 0.80 +0.8
474,231 - GFF1810 0.80 +0.6
474,231 - GFF1810 0.80 -1.2
474,231 - GFF1810 0.80 -0.4
474,733 + -0.1
474,733 + -0.4
474,733 + +0.3
474,733 + +1.8
474,734 - -0.7
474,735 + -1.0
474,735 + +0.2
474,735 + -0.5
474,736 - +0.2
474,983 + GFF1811 0.17 -0.4
474,983 + GFF1811 0.17 +1.2
474,983 + GFF1811 0.17 -0.9
474,983 + GFF1811 0.17 -1.1
474,983 + GFF1811 0.17 -0.0
474,983 + GFF1811 0.17 -1.3
474,983 + GFF1811 0.17 +0.2
474,983 + GFF1811 0.17 -0.1
474,983 + GFF1811 0.17 +0.3
474,984 - GFF1811 0.17 -1.2
474,984 - GFF1811 0.17 -1.5
474,984 - GFF1811 0.17 -0.4
474,984 - GFF1811 0.17 -0.2
474,984 - GFF1811 0.17 -0.8
474,984 - GFF1811 0.17 -1.0
474,984 - GFF1811 0.17 -0.2
474,984 - GFF1811 0.17 +0.4
475,148 + GFF1811 0.29 -0.9
475,149 - GFF1811 0.29 -0.4
475,172 + GFF1811 0.31 -0.5
475,172 + GFF1811 0.31 +0.7
475,172 + GFF1811 0.31 -2.3
475,172 + GFF1811 0.31 -0.6
475,172 + GFF1811 0.31 +0.2
475,173 - GFF1811 0.31 -0.4
475,173 - GFF1811 0.31 -0.3
475,173 - GFF1811 0.31 +0.3
475,214 + GFF1811 0.34 +0.4
475,214 + GFF1811 0.34 -0.7
475,215 - GFF1811 0.34 -1.0
475,215 - GFF1811 0.34 -0.3
475,215 - GFF1811 0.34 -0.5
475,289 + GFF1811 0.40 -2.2
475,289 + GFF1811 0.40 +0.8
475,289 + GFF1811 0.40 +1.8
475,290 - GFF1811 0.40 -1.3
475,290 - GFF1811 0.40 +0.5
475,290 - GFF1811 0.40 -0.0
475,290 - GFF1811 0.40 -0.6
475,337 + GFF1811 0.43 -0.4
475,338 - GFF1811 0.43 -1.5
475,338 - GFF1811 0.43 +0.2
475,745 + GFF1811 0.74 -0.1
475,745 + GFF1811 0.74 -0.0
475,745 + GFF1811 0.74 +0.4
475,746 - GFF1811 0.74 -3.1
475,746 - GFF1811 0.74 -1.0
475,826 + GFF1811 0.80 +0.4
475,917 - GFF1811 0.86 +0.7
475,917 - GFF1811 0.86 -0.5
475,917 - GFF1811 0.86 -0.1
475,917 - GFF1811 0.86 -0.4
476,048 + +0.4
476,048 + +0.5
476,049 - -0.7
476,429 - GFF1812 0.51 -0.2
476,429 - GFF1812 0.51 -0.4
476,429 - GFF1812 0.51 -1.0
476,429 - GFF1812 0.51 +1.3
476,458 + GFF1812 0.55 -1.3
476,458 + GFF1812 0.55 -1.1
476,458 + GFF1812 0.55 +0.4
476,459 - GFF1812 0.55 +0.1
476,648 - GFF1812 0.84 +2.8
476,852 - +1.3
476,912 + GFF1813 0.10 -0.0
476,912 + GFF1813 0.10 +1.8
476,913 - GFF1813 0.10 -0.1
476,942 + GFF1813 0.13 -0.3
476,942 + GFF1813 0.13 -1.0
476,943 - GFF1813 0.13 -1.2
476,943 - GFF1813 0.13 -1.9
476,943 - GFF1813 0.13 +1.0
476,960 + GFF1813 0.14 +0.5
476,960 + GFF1813 0.14 -0.7
476,960 + GFF1813 0.14 +0.3
476,960 + GFF1813 0.14 -0.4

Or see this region's nucleotide sequence