Strain Fitness in Variovorax sp. SCN45 around GFF1682
Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL |
|---|---|---|---|---|---|
| remove | |||||
| 326,092 | + | -0.9 | |||
| 326,144 | - | GFF1681 | 0.14 | -0.6 | |
| 326,282 | - | GFF1681 | 0.29 | -0.1 | |
| 326,698 | + | GFF1681 | 0.77 | -0.4 | |
| 326,699 | - | GFF1681 | 0.77 | +1.9 | |
| 327,489 | + | GFF1682 | 0.42 | +0.4 | |
| 327,872 | + | GFF1682 | 0.69 | -1.2 | |
| 327,872 | + | GFF1682 | 0.69 | +0.7 | |
| 327,873 | - | GFF1682 | 0.69 | +0.2 | |
| 328,423 | + | GFF1683 | 0.20 | +0.3 |
Or see this region's nucleotide sequence