Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1353 and GFF1354 are separated by 14 nucleotides GFF1354 and GFF1355 are separated by 138 nucleotides GFF1355 and GFF1356 are separated by 529 nucleotides
GFF1353 - Short-chain dehydrogenase/reductase SDR, at 696,423 to 697,328
GFF1353
GFF1354 - FMN-dependent NADH-azoreductase (EC 1.7.1.6), at 697,343 to 698,014
GFF1354
GFF1355 - Transcriptional regulator, LysR family, at 698,153 to 699,058
GFF1355
GFF1356 - Putative manganese efflux pump MntP, at 699,588 to 700,157
GFF1356
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2 at 697.188 kb on + strand, within GFF1353 at 697.188 kb on + strand, within GFF1353 at 697.189 kb on - strand, within GFF1353 at 697.189 kb on - strand, within GFF1353 at 697.189 kb on - strand, within GFF1353 at 697.189 kb on - strand, within GFF1353 at 697.571 kb on + strand, within GFF1354 at 697.572 kb on - strand, within GFF1354 at 697.572 kb on - strand, within GFF1354 at 697.608 kb on + strand, within GFF1354 at 697.608 kb on + strand, within GFF1354 at 697.609 kb on - strand, within GFF1354 at 697.609 kb on - strand, within GFF1354 at 697.609 kb on - strand, within GFF1354 at 697.609 kb on - strand, within GFF1354 at 697.609 kb on - strand, within GFF1354 at 697.609 kb on - strand, within GFF1354 at 697.609 kb on - strand, within GFF1354 at 697.704 kb on + strand, within GFF1354 at 697.704 kb on + strand, within GFF1354 at 697.704 kb on + strand, within GFF1354 at 697.704 kb on + strand, within GFF1354 at 697.704 kb on + strand, within GFF1354 at 697.704 kb on + strand, within GFF1354 at 697.705 kb on - strand, within GFF1354 at 697.705 kb on - strand, within GFF1354 at 697.705 kb on - strand, within GFF1354 at 697.705 kb on - strand, within GFF1354 at 697.705 kb on - strand, within GFF1354 at 697.816 kb on - strand, within GFF1354 at 697.816 kb on - strand, within GFF1354 at 698.055 kb on + strand at 698.055 kb on + strand at 698.055 kb on + strand at 698.056 kb on - strand at 698.056 kb on - strand at 698.056 kb on - strand at 698.056 kb on - strand at 698.056 kb on - strand at 698.089 kb on + strand at 698.089 kb on + strand at 698.089 kb on + strand at 698.089 kb on + strand at 698.089 kb on + strand at 698.089 kb on + strand at 698.090 kb on - strand at 698.090 kb on - strand at 698.090 kb on - strand at 698.960 kb on + strand, within GFF1355 at 698.961 kb on - strand, within GFF1355 at 698.961 kb on - strand, within GFF1355 at 698.961 kb on - strand, within GFF1355 at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.159 kb on - strand at 699.159 kb on - strand at 699.277 kb on + strand at 699.277 kb on + strand at 699.277 kb on + strand at 699.277 kb on + strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.330 kb on + strand at 699.345 kb on + strand at 699.346 kb on - strand at 699.346 kb on - strand at 699.391 kb on + strand at 699.392 kb on - strand at 699.392 kb on - strand at 699.392 kb on - strand at 699.392 kb on - strand at 699.415 kb on + strand at 699.415 kb on + strand at 699.415 kb on + strand at 699.416 kb on - strand at 699.453 kb on + strand at 699.453 kb on + strand at 699.453 kb on + strand at 699.453 kb on + strand at 699.453 kb on + strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.516 kb on + strand at 699.516 kb on + strand at 699.516 kb on + strand at 699.516 kb on + strand at 699.516 kb on + strand at 699.517 kb on - strand at 699.517 kb on - strand at 699.578 kb on + strand at 699.579 kb on - strand at 699.579 kb on - strand at 699.579 kb on - strand at 699.777 kb on + strand, within GFF1356 at 699.777 kb on + strand, within GFF1356 at 699.778 kb on - strand, within GFF1356 at 699.778 kb on - strand, within GFF1356
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 697,188 + GFF1353 0.84 +0.8 697,188 + GFF1353 0.84 +0.3 697,189 - GFF1353 0.85 +0.0 697,189 - GFF1353 0.85 -0.7 697,189 - GFF1353 0.85 +1.5 697,189 - GFF1353 0.85 +0.7 697,571 + GFF1354 0.34 +0.2 697,572 - GFF1354 0.34 +1.2 697,572 - GFF1354 0.34 +0.4 697,608 + GFF1354 0.39 -0.5 697,608 + GFF1354 0.39 +0.9 697,609 - GFF1354 0.40 -1.7 697,609 - GFF1354 0.40 +0.3 697,609 - GFF1354 0.40 -0.2 697,609 - GFF1354 0.40 +1.2 697,609 - GFF1354 0.40 -1.0 697,609 - GFF1354 0.40 -0.3 697,609 - GFF1354 0.40 -0.2 697,704 + GFF1354 0.54 -0.1 697,704 + GFF1354 0.54 -1.0 697,704 + GFF1354 0.54 -0.9 697,704 + GFF1354 0.54 -1.9 697,704 + GFF1354 0.54 +0.3 697,704 + GFF1354 0.54 +1.2 697,705 - GFF1354 0.54 -1.2 697,705 - GFF1354 0.54 +1.5 697,705 - GFF1354 0.54 -0.5 697,705 - GFF1354 0.54 +0.8 697,705 - GFF1354 0.54 -0.5 697,816 - GFF1354 0.70 +0.2 697,816 - GFF1354 0.70 -1.1 698,055 + +0.8 698,055 + -0.6 698,055 + +1.5 698,056 - -0.9 698,056 - -1.0 698,056 - +0.2 698,056 - +0.0 698,056 - -1.5 698,089 + +0.8 698,089 + -1.3 698,089 + +0.4 698,089 + -0.6 698,089 + +1.2 698,089 + -1.3 698,090 - -0.5 698,090 - +2.1 698,090 - -2.3 698,960 + GFF1355 0.89 +1.0 698,961 - GFF1355 0.89 +0.1 698,961 - GFF1355 0.89 +1.1 698,961 - GFF1355 0.89 +0.5 699,158 + +2.0 699,158 + -0.1 699,158 + -0.3 699,158 + +0.7 699,158 + -1.1 699,159 - -2.1 699,159 - -0.9 699,277 + -0.1 699,277 + -0.4 699,277 + -1.1 699,277 + -0.2 699,278 - -0.2 699,278 - -0.1 699,278 - -0.8 699,278 - -0.4 699,278 - -0.0 699,278 - -0.5 699,330 + +0.0 699,345 + -0.2 699,346 - -2.3 699,346 - +0.3 699,391 + -0.5 699,392 - -0.3 699,392 - +0.0 699,392 - +1.0 699,392 - -0.6 699,415 + -0.2 699,415 + -1.1 699,415 + -0.4 699,416 - -1.3 699,453 + +0.9 699,453 + +0.5 699,453 + -0.1 699,453 + -1.3 699,453 + -0.2 699,454 - -0.3 699,454 - -1.5 699,454 - +0.7 699,454 - +0.2 699,454 - -0.1 699,454 - +0.0 699,516 + -0.5 699,516 + -0.1 699,516 + +1.9 699,516 + -0.6 699,516 + -0.0 699,517 - -1.3 699,517 - -0.6 699,578 + -0.2 699,579 - -1.1 699,579 - -0.6 699,579 - -0.2 699,777 + GFF1356 0.33 +0.5 699,777 + GFF1356 0.33 -0.3 699,778 - GFF1356 0.33 -0.5 699,778 - GFF1356 0.33 +0.1
Or see this region's nucleotide sequence