Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1305 and GFF1306 are separated by 38 nucleotides GFF1306 and GFF1307 are separated by 106 nucleotides GFF1307 and GFF1308 are separated by 6 nucleotides GFF1308 and GFF1309 are separated by 4 nucleotides
GFF1305 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 635,786 to 636,841
GFF1305
GFF1306 - no description, at 636,880 to 637,005
GFF1306
GFF1307 - Homoserine dehydrogenase (EC 1.1.1.3), at 637,112 to 638,476
GFF1307
GFF1308 - hypothetical protein, at 638,483 to 638,881
GFF1308
GFF1309 - Phosphoglucomutase (EC 5.4.2.2), at 638,886 to 640,541
GFF1309
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 636.335 kb on + strand, within GFF1305 at 636.335 kb on + strand, within GFF1305 at 636.336 kb on - strand, within GFF1305 at 636.336 kb on - strand, within GFF1305 at 636.336 kb on - strand, within GFF1305 at 636.476 kb on + strand, within GFF1305 at 636.476 kb on + strand, within GFF1305 at 636.476 kb on + strand, within GFF1305 at 636.477 kb on - strand, within GFF1305 at 636.737 kb on + strand at 636.737 kb on + strand at 636.737 kb on + strand at 636.738 kb on - strand at 636.738 kb on - strand at 636.749 kb on + strand at 636.750 kb on - strand at 636.770 kb on + strand at 636.770 kb on + strand at 636.800 kb on + strand at 636.801 kb on - strand at 636.864 kb on + strand at 636.987 kb on + strand, within GFF1306 at 636.987 kb on + strand, within GFF1306 at 636.987 kb on + strand, within GFF1306 at 636.988 kb on - strand, within GFF1306 at 636.988 kb on - strand, within GFF1306 at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.116 kb on - strand at 637.116 kb on - strand at 637.116 kb on - strand at 637.116 kb on - strand at 637.116 kb on - strand at 637.174 kb on + strand at 637.174 kb on + strand at 637.175 kb on - strand at 637.325 kb on - strand, within GFF1307 at 637.325 kb on - strand, within GFF1307 at 637.551 kb on - strand, within GFF1307 at 637.551 kb on - strand, within GFF1307 at 637.551 kb on - strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.054 kb on + strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.055 kb on - strand, within GFF1307 at 638.057 kb on + strand, within GFF1307 at 638.057 kb on + strand, within GFF1307 at 638.057 kb on + strand, within GFF1307 at 638.058 kb on - strand, within GFF1307 at 638.058 kb on - strand, within GFF1307 at 638.231 kb on + strand, within GFF1307 at 638.231 kb on + strand, within GFF1307 at 638.231 kb on + strand, within GFF1307 at 638.232 kb on - strand, within GFF1307 at 638.232 kb on - strand, within GFF1307 at 638.514 kb on + strand at 638.514 kb on + strand at 638.515 kb on - strand at 638.974 kb on + strand at 638.974 kb on + strand at 638.975 kb on - strand at 638.983 kb on + strand at 638.983 kb on + strand at 638.983 kb on + strand at 638.983 kb on + strand at 638.983 kb on + strand at 638.983 kb on + strand at 638.983 kb on + strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 638.984 kb on - strand at 639.230 kb on - strand, within GFF1309 at 639.427 kb on + strand, within GFF1309 at 639.427 kb on + strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309 at 639.428 kb on - strand, within GFF1309
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 636,335 + GFF1305 0.52 -1.6 636,335 + GFF1305 0.52 +0.8 636,336 - GFF1305 0.52 -2.3 636,336 - GFF1305 0.52 -2.2 636,336 - GFF1305 0.52 +0.1 636,476 + GFF1305 0.65 -1.1 636,476 + GFF1305 0.65 +0.3 636,476 + GFF1305 0.65 -1.9 636,477 - GFF1305 0.65 +0.9 636,737 + -0.1 636,737 + -1.1 636,737 + -0.5 636,738 - -0.9 636,738 - -0.8 636,749 + -1.3 636,750 - -0.9 636,770 + -0.6 636,770 + +0.3 636,800 + +0.3 636,801 - -0.7 636,864 + +0.7 636,987 + GFF1306 0.85 +0.3 636,987 + GFF1306 0.85 -1.5 636,987 + GFF1306 0.85 -0.6 636,988 - GFF1306 0.86 -1.3 636,988 - GFF1306 0.86 -0.2 637,041 + -0.8 637,041 + +0.3 637,041 + -0.9 637,041 + +0.1 637,041 + +1.0 637,041 + -0.1 637,041 + +0.0 637,042 - +0.3 637,042 - +0.1 637,042 - +0.1 637,042 - +1.1 637,042 - -1.2 637,042 - -1.9 637,115 + -0.9 637,115 + +0.7 637,115 + -1.4 637,115 + +0.2 637,115 + -1.4 637,115 + +1.5 637,115 + -1.1 637,116 - -0.3 637,116 - +0.1 637,116 - -1.1 637,116 - -0.2 637,116 - -0.2 637,174 + +0.4 637,174 + -1.6 637,175 - +0.7 637,325 - GFF1307 0.16 -0.9 637,325 - GFF1307 0.16 -0.3 637,551 - GFF1307 0.32 +0.6 637,551 - GFF1307 0.32 -1.9 637,551 - GFF1307 0.32 -3.0 638,054 + GFF1307 0.69 -1.0 638,054 + GFF1307 0.69 +0.0 638,054 + GFF1307 0.69 -0.2 638,054 + GFF1307 0.69 +0.7 638,054 + GFF1307 0.69 -0.1 638,054 + GFF1307 0.69 -1.2 638,054 + GFF1307 0.69 +0.6 638,054 + GFF1307 0.69 +1.5 638,054 + GFF1307 0.69 +1.0 638,055 - GFF1307 0.69 -0.0 638,055 - GFF1307 0.69 +0.4 638,055 - GFF1307 0.69 +0.5 638,055 - GFF1307 0.69 -1.5 638,055 - GFF1307 0.69 +0.7 638,055 - GFF1307 0.69 -0.8 638,055 - GFF1307 0.69 -1.5 638,055 - GFF1307 0.69 -0.1 638,055 - GFF1307 0.69 -0.3 638,057 + GFF1307 0.69 -0.6 638,057 + GFF1307 0.69 +0.1 638,057 + GFF1307 0.69 +2.7 638,058 - GFF1307 0.69 -1.3 638,058 - GFF1307 0.69 -0.5 638,231 + GFF1307 0.82 +0.2 638,231 + GFF1307 0.82 -0.2 638,231 + GFF1307 0.82 -0.3 638,232 - GFF1307 0.82 +0.2 638,232 - GFF1307 0.82 -0.1 638,514 + -0.1 638,514 + -0.4 638,515 - -0.5 638,974 + -0.1 638,974 + +1.7 638,975 - -0.1 638,983 + +0.2 638,983 + -0.2 638,983 + -0.5 638,983 + -0.9 638,983 + -0.1 638,983 + +0.1 638,983 + -1.2 638,984 - +1.4 638,984 - -0.1 638,984 - +0.8 638,984 - -1.8 638,984 - -1.8 638,984 - -1.9 638,984 - -0.5 638,984 - -1.1 638,984 - +0.7 638,984 - -0.3 638,984 - -0.1 639,230 - GFF1309 0.21 -1.1 639,427 + GFF1309 0.33 -0.7 639,427 + GFF1309 0.33 -1.4 639,428 - GFF1309 0.33 -1.1 639,428 - GFF1309 0.33 +0.9 639,428 - GFF1309 0.33 +0.9 639,428 - GFF1309 0.33 -0.3 639,428 - GFF1309 0.33 -1.4 639,428 - GFF1309 0.33 -0.2 639,428 - GFF1309 0.33 +0.0 639,428 - GFF1309 0.33 -0.9 639,428 - GFF1309 0.33 -0.1 639,428 - GFF1309 0.33 -0.2
Or see this region's nucleotide sequence