Strain Fitness in Variovorax sp. SCN45 around GFF877

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF876 and GFF877 overlap by 4 nucleotidesGFF877 and GFF878 are separated by 112 nucleotidesGFF878 and GFF879 are separated by 228 nucleotides GFF876 - hypothetical protein, at 184,848 to 186,509 GFF876 GFF877 - putative membrane protein, at 186,506 to 187,498 GFF877 GFF878 - COGs COG2343, at 187,611 to 188,000 GFF878 GFF879 - BUG/TctC family periplasmic protein, at 188,229 to 189,305 GFF879 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1at 185.680 kb on + strand, within GFF876at 185.681 kb on - strand, within GFF876at 186.307 kb on + strand, within GFF876at 186.307 kb on + strand, within GFF876at 186.307 kb on + strand, within GFF876at 186.308 kb on - strand, within GFF876at 186.308 kb on - strand, within GFF876at 186.308 kb on - strand, within GFF876at 186.308 kb on - strand, within GFF876at 186.308 kb on - strand, within GFF876at 186.308 kb on - strand, within GFF876at 186.787 kb on - strand, within GFF877at 187.011 kb on + strand, within GFF877at 187.012 kb on - strand, within GFF877at 187.150 kb on - strand, within GFF877at 187.161 kb on + strand, within GFF877at 187.162 kb on - strand, within GFF877at 187.162 kb on - strand, within GFF877at 187.388 kb on + strand, within GFF877at 187.476 kb on + strandat 187.476 kb on + strandat 187.651 kb on + strand, within GFF878at 187.691 kb on - strand, within GFF878at 187.702 kb on + strand, within GFF878at 187.702 kb on + strand, within GFF878at 187.703 kb on - strand, within GFF878at 187.750 kb on + strand, within GFF878at 187.750 kb on + strand, within GFF878at 187.751 kb on - strand, within GFF878at 187.751 kb on - strand, within GFF878at 187.753 kb on + strand, within GFF878at 187.754 kb on - strand, within GFF878at 187.754 kb on - strand, within GFF878at 187.771 kb on + strand, within GFF878at 187.772 kb on - strand, within GFF878at 187.772 kb on - strand, within GFF878at 187.780 kb on + strand, within GFF878at 187.780 kb on + strand, within GFF878at 187.781 kb on - strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.838 kb on - strand, within GFF878at 187.838 kb on - strand, within GFF878at 187.838 kb on - strand, within GFF878at 187.838 kb on - strand, within GFF878at 188.212 kb on + strandat 188.212 kb on + strandat 188.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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185,680 + GFF876 0.50 -0.3
185,681 - GFF876 0.50 -2.5
186,307 + GFF876 0.88 +0.3
186,307 + GFF876 0.88 -0.1
186,307 + GFF876 0.88 +0.1
186,308 - GFF876 0.88 +0.6
186,308 - GFF876 0.88 -1.1
186,308 - GFF876 0.88 +0.3
186,308 - GFF876 0.88 -1.1
186,308 - GFF876 0.88 -0.9
186,308 - GFF876 0.88 -0.1
186,787 - GFF877 0.28 -0.7
187,011 + GFF877 0.51 -0.4
187,012 - GFF877 0.51 +0.0
187,150 - GFF877 0.65 -0.8
187,161 + GFF877 0.66 +1.5
187,162 - GFF877 0.66 -0.4
187,162 - GFF877 0.66 -0.7
187,388 + GFF877 0.89 -0.8
187,476 + -0.8
187,476 + -0.2
187,651 + GFF878 0.10 +0.4
187,691 - GFF878 0.21 +0.5
187,702 + GFF878 0.23 -0.1
187,702 + GFF878 0.23 +0.0
187,703 - GFF878 0.24 -1.1
187,750 + GFF878 0.36 +0.6
187,750 + GFF878 0.36 +0.1
187,751 - GFF878 0.36 -1.4
187,751 - GFF878 0.36 +0.4
187,753 + GFF878 0.36 +1.1
187,754 - GFF878 0.37 -0.3
187,754 - GFF878 0.37 -2.3
187,771 + GFF878 0.41 -1.2
187,772 - GFF878 0.41 -0.5
187,772 - GFF878 0.41 +0.9
187,780 + GFF878 0.43 -0.1
187,780 + GFF878 0.43 -0.1
187,781 - GFF878 0.44 -0.5
187,837 + GFF878 0.58 +0.9
187,837 + GFF878 0.58 -0.2
187,837 + GFF878 0.58 +0.0
187,837 + GFF878 0.58 -0.1
187,837 + GFF878 0.58 -0.3
187,838 - GFF878 0.58 -0.2
187,838 - GFF878 0.58 -0.5
187,838 - GFF878 0.58 +1.3
187,838 - GFF878 0.58 +0.2
188,212 + -0.4
188,212 + +0.0
188,228 - -0.3

Or see this region's nucleotide sequence