Strain Fitness in Variovorax sp. SCN45 around GFF815

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF814 and GFF815 overlap by 4 nucleotidesGFF815 and GFF816 are separated by 16 nucleotides GFF814 - BUG/TctC family periplasmic protein, at 119,392 to 120,372 GFF814 GFF815 - COGs COG3777, at 120,369 to 121,286 GFF815 GFF816 - L-carnitine dehydratase/bile acid-inducible protein F, at 121,303 to 122,484 GFF816 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2 3at 119.391 kb on + strandat 119.391 kb on + strandat 119.391 kb on + strandat 119.392 kb on - strandat 119.392 kb on - strandat 119.392 kb on - strandat 119.392 kb on - strandat 119.392 kb on - strandat 119.394 kb on - strandat 119.473 kb on + strandat 119.659 kb on + strand, within GFF814at 119.659 kb on + strand, within GFF814at 119.660 kb on - strand, within GFF814at 119.660 kb on - strand, within GFF814at 119.660 kb on - strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.710 kb on + strand, within GFF814at 119.711 kb on - strand, within GFF814at 119.711 kb on - strand, within GFF814at 119.857 kb on + strand, within GFF814at 119.857 kb on + strand, within GFF814at 119.857 kb on + strand, within GFF814at 119.857 kb on + strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.858 kb on - strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.863 kb on + strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.864 kb on - strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.950 kb on + strand, within GFF814at 119.951 kb on - strand, within GFF814at 119.951 kb on - strand, within GFF814at 119.951 kb on - strand, within GFF814at 119.951 kb on - strand, within GFF814at 119.951 kb on - strand, within GFF814at 120.133 kb on + strand, within GFF814at 120.133 kb on + strand, within GFF814at 120.134 kb on - strand, within GFF814at 120.134 kb on - strand, within GFF814at 120.134 kb on - strand, within GFF814at 120.982 kb on - strand, within GFF815at 121.018 kb on - strand, within GFF815at 121.018 kb on - strand, within GFF815at 121.030 kb on - strand, within GFF815at 121.030 kb on - strand, within GFF815at 121.293 kb on + strandat 121.293 kb on + strandat 121.294 kb on - strandat 121.678 kb on + strand, within GFF816at 121.679 kb on - strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.942 kb on + strand, within GFF816at 121.942 kb on + strand, within GFF816at 121.943 kb on - strand, within GFF816at 121.943 kb on - strand, within GFF816at 121.993 kb on + strand, within GFF816at 121.993 kb on + strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.999 kb on + strand, within GFF816at 122.000 kb on - strand, within GFF816

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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119,391 + -0.4
119,391 + -0.3
119,391 + +0.1
119,392 - +0.2
119,392 - -0.5
119,392 - +0.5
119,392 - -0.8
119,392 - +0.2
119,394 - -0.3
119,473 + -0.3
119,659 + GFF814 0.27 -0.6
119,659 + GFF814 0.27 -2.3
119,660 - GFF814 0.27 -0.8
119,660 - GFF814 0.27 +0.0
119,660 - GFF814 0.27 -0.3
119,710 + GFF814 0.32 -0.1
119,710 + GFF814 0.32 -1.1
119,710 + GFF814 0.32 -0.5
119,710 + GFF814 0.32 +0.3
119,710 + GFF814 0.32 +2.8
119,711 - GFF814 0.33 -0.3
119,711 - GFF814 0.33 +0.3
119,857 + GFF814 0.47 -0.4
119,857 + GFF814 0.47 -1.3
119,857 + GFF814 0.47 +0.5
119,857 + GFF814 0.47 -0.4
119,858 - GFF814 0.48 -0.1
119,858 - GFF814 0.48 -0.1
119,858 - GFF814 0.48 +0.2
119,858 - GFF814 0.48 +0.1
119,858 - GFF814 0.48 -0.3
119,863 + GFF814 0.48 +1.3
119,863 + GFF814 0.48 -0.6
119,863 + GFF814 0.48 +0.1
119,863 + GFF814 0.48 -0.9
119,863 + GFF814 0.48 -1.3
119,863 + GFF814 0.48 -1.3
119,864 - GFF814 0.48 -0.7
119,864 - GFF814 0.48 -0.0
119,864 - GFF814 0.48 -0.4
119,864 - GFF814 0.48 -0.9
119,864 - GFF814 0.48 -1.7
119,950 + GFF814 0.57 -0.5
119,950 + GFF814 0.57 -0.4
119,950 + GFF814 0.57 -0.1
119,950 + GFF814 0.57 +0.8
119,950 + GFF814 0.57 +1.5
119,950 + GFF814 0.57 +0.4
119,950 + GFF814 0.57 -0.0
119,950 + GFF814 0.57 -0.1
119,950 + GFF814 0.57 -0.5
119,951 - GFF814 0.57 -0.2
119,951 - GFF814 0.57 -0.1
119,951 - GFF814 0.57 -0.3
119,951 - GFF814 0.57 +0.4
119,951 - GFF814 0.57 -0.5
120,133 + GFF814 0.76 +0.6
120,133 + GFF814 0.76 +1.3
120,134 - GFF814 0.76 -0.1
120,134 - GFF814 0.76 -1.3
120,134 - GFF814 0.76 -0.4
120,982 - GFF815 0.67 -1.6
121,018 - GFF815 0.71 +0.3
121,018 - GFF815 0.71 -1.3
121,030 - GFF815 0.72 -1.0
121,030 - GFF815 0.72 -0.4
121,293 + -1.1
121,293 + -1.8
121,294 - -1.3
121,678 + GFF816 0.32 -0.0
121,679 - GFF816 0.32 +0.7
121,714 + GFF816 0.35 +0.8
121,714 + GFF816 0.35 +0.4
121,714 + GFF816 0.35 -0.4
121,714 + GFF816 0.35 +1.8
121,714 + GFF816 0.35 -0.5
121,714 + GFF816 0.35 -2.2
121,714 + GFF816 0.35 -1.5
121,714 + GFF816 0.35 +0.2
121,714 + GFF816 0.35 +0.6
121,714 + GFF816 0.35 -1.0
121,714 + GFF816 0.35 -1.5
121,714 + GFF816 0.35 -0.8
121,714 + GFF816 0.35 -0.1
121,714 + GFF816 0.35 -0.3
121,714 + GFF816 0.35 +0.1
121,715 - GFF816 0.35 +1.1
121,715 - GFF816 0.35 -0.8
121,715 - GFF816 0.35 -0.8
121,715 - GFF816 0.35 -0.5
121,715 - GFF816 0.35 -0.9
121,715 - GFF816 0.35 -0.4
121,715 - GFF816 0.35 +0.8
121,819 + GFF816 0.44 +1.5
121,819 + GFF816 0.44 -1.4
121,819 + GFF816 0.44 -0.3
121,819 + GFF816 0.44 +1.2
121,819 + GFF816 0.44 +0.7
121,819 + GFF816 0.44 -1.6
121,819 + GFF816 0.44 -1.1
121,819 + GFF816 0.44 +0.5
121,819 + GFF816 0.44 +0.2
121,819 + GFF816 0.44 -0.0
121,819 + GFF816 0.44 +0.9
121,819 + GFF816 0.44 -0.9
121,819 + GFF816 0.44 +0.8
121,819 + GFF816 0.44 -1.3
121,819 + GFF816 0.44 +0.9
121,819 + GFF816 0.44 +0.1
121,819 + GFF816 0.44 -0.6
121,819 + GFF816 0.44 -0.8
121,819 + GFF816 0.44 +1.5
121,819 + GFF816 0.44 +0.1
121,819 + GFF816 0.44 -0.5
121,819 + GFF816 0.44 -0.4
121,819 + GFF816 0.44 -0.5
121,820 - GFF816 0.44 +0.6
121,820 - GFF816 0.44 -0.4
121,820 - GFF816 0.44 -0.1
121,820 - GFF816 0.44 +0.5
121,820 - GFF816 0.44 +0.2
121,820 - GFF816 0.44 +0.1
121,820 - GFF816 0.44 -0.4
121,820 - GFF816 0.44 -0.7
121,820 - GFF816 0.44 +0.0
121,820 - GFF816 0.44 -0.6
121,820 - GFF816 0.44 +0.0
121,820 - GFF816 0.44 -0.6
121,820 - GFF816 0.44 +1.3
121,820 - GFF816 0.44 -0.9
121,825 + GFF816 0.44 -1.1
121,825 + GFF816 0.44 -1.9
121,825 + GFF816 0.44 +0.2
121,933 + GFF816 0.53 +0.0
121,933 + GFF816 0.53 +0.5
121,933 + GFF816 0.53 -1.5
121,933 + GFF816 0.53 -2.5
121,933 + GFF816 0.53 -2.6
121,933 + GFF816 0.53 +0.7
121,933 + GFF816 0.53 -0.1
121,934 - GFF816 0.53 +0.3
121,934 - GFF816 0.53 -1.4
121,934 - GFF816 0.53 -1.1
121,934 - GFF816 0.53 +0.1
121,934 - GFF816 0.53 -0.3
121,934 - GFF816 0.53 +1.8
121,934 - GFF816 0.53 -0.6
121,934 - GFF816 0.53 +1.3
121,934 - GFF816 0.53 -1.5
121,934 - GFF816 0.53 -1.6
121,934 - GFF816 0.53 -0.9
121,934 - GFF816 0.53 -0.8
121,934 - GFF816 0.53 +1.1
121,936 + GFF816 0.54 +0.5
121,936 + GFF816 0.54 -1.1
121,936 + GFF816 0.54 -0.5
121,936 + GFF816 0.54 -0.8
121,936 + GFF816 0.54 +0.3
121,936 + GFF816 0.54 +0.4
121,936 + GFF816 0.54 -0.2
121,936 + GFF816 0.54 -0.9
121,936 + GFF816 0.54 -0.3
121,937 - GFF816 0.54 +2.5
121,937 - GFF816 0.54 -0.5
121,937 - GFF816 0.54 -1.1
121,937 - GFF816 0.54 +2.0
121,937 - GFF816 0.54 -0.6
121,937 - GFF816 0.54 -0.2
121,937 - GFF816 0.54 +0.1
121,942 + GFF816 0.54 -0.2
121,942 + GFF816 0.54 +0.1
121,943 - GFF816 0.54 -0.2
121,943 - GFF816 0.54 +0.0
121,993 + GFF816 0.58 -0.5
121,993 + GFF816 0.58 -1.3
121,994 - GFF816 0.58 -0.2
121,994 - GFF816 0.58 +0.7
121,994 - GFF816 0.58 +0.5
121,994 - GFF816 0.58 -0.7
121,994 - GFF816 0.58 +0.5
121,999 + GFF816 0.59 -1.3
122,000 - GFF816 0.59 -0.9

Or see this region's nucleotide sequence