Strain Fitness in Variovorax sp. SCN45 around GFF799

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF798 and GFF799 are separated by 34 nucleotidesGFF799 and GFF800 are separated by 123 nucleotides GFF798 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 102,773 to 104,401 GFF798 GFF799 - Rrf2 family transcriptional regulator, group III, at 104,436 to 104,870 GFF799 GFF800 - hypothetical protein, at 104,994 to 106,904 GFF800 Position (kb) 104 105Strain fitness (log2 ratio) -2 -1 0 1 2at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.505 kb on + strand, within GFF798at 103.506 kb on - strand, within GFF798at 103.506 kb on - strand, within GFF798at 103.700 kb on + strand, within GFF798at 103.700 kb on + strand, within GFF798at 103.700 kb on + strand, within GFF798at 103.701 kb on - strand, within GFF798at 103.701 kb on - strand, within GFF798at 103.784 kb on + strand, within GFF798at 103.785 kb on - strand, within GFF798at 103.785 kb on - strand, within GFF798at 103.785 kb on - strand, within GFF798at 103.785 kb on - strand, within GFF798at 103.799 kb on + strand, within GFF798at 103.800 kb on - strand, within GFF798at 103.841 kb on + strand, within GFF798at 103.841 kb on + strand, within GFF798at 103.841 kb on + strand, within GFF798at 103.841 kb on + strand, within GFF798at 103.841 kb on + strand, within GFF798at 103.841 kb on + strand, within GFF798at 103.842 kb on - strand, within GFF798at 103.904 kb on + strand, within GFF798at 103.904 kb on + strand, within GFF798at 103.904 kb on + strand, within GFF798at 104.006 kb on + strand, within GFF798at 104.007 kb on - strand, within GFF798at 104.007 kb on - strand, within GFF798at 104.007 kb on - strand, within GFF798at 104.007 kb on - strand, within GFF798at 104.007 kb on - strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.054 kb on + strand, within GFF798at 104.055 kb on - strand, within GFF798at 104.055 kb on - strand, within GFF798at 104.055 kb on - strand, within GFF798at 104.055 kb on - strand, within GFF798at 104.055 kb on - strand, within GFF798at 104.055 kb on - strand, within GFF798at 104.055 kb on - strand, within GFF798at 104.175 kb on - strand, within GFF798at 104.244 kb on - strandat 104.399 kb on + strandat 104.399 kb on + strandat 104.785 kb on - strand, within GFF799at 104.868 kb on + strandat 104.868 kb on + strandat 104.868 kb on + strandat 104.869 kb on - strandat 104.869 kb on - strandat 104.869 kb on - strandat 104.949 kb on + strandat 104.950 kb on - strandat 104.970 kb on + strandat 104.983 kb on + strandat 104.983 kb on + strandat 104.983 kb on + strandat 104.984 kb on - strandat 104.984 kb on - strandat 104.984 kb on - strandat 104.984 kb on - strandat 104.984 kb on - strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.183 kb on + strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.184 kb on - strandat 105.291 kb on + strand, within GFF800at 105.291 kb on + strand, within GFF800at 105.291 kb on + strand, within GFF800at 105.291 kb on + strand, within GFF800at 105.291 kb on + strand, within GFF800at 105.291 kb on + strand, within GFF800at 105.291 kb on + strand, within GFF800at 105.292 kb on - strand, within GFF800at 105.472 kb on - strand, within GFF800

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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103,484 + GFF798 0.44 -0.7
103,484 + GFF798 0.44 +0.5
103,484 + GFF798 0.44 -0.2
103,484 + GFF798 0.44 -0.6
103,484 + GFF798 0.44 -0.2
103,484 + GFF798 0.44 -0.9
103,484 + GFF798 0.44 -0.4
103,484 + GFF798 0.44 -0.1
103,484 + GFF798 0.44 -0.7
103,484 + GFF798 0.44 -2.3
103,484 + GFF798 0.44 -0.5
103,484 + GFF798 0.44 -0.1
103,484 + GFF798 0.44 -0.7
103,484 + GFF798 0.44 +0.7
103,485 - GFF798 0.44 +0.5
103,485 - GFF798 0.44 +0.9
103,485 - GFF798 0.44 -1.5
103,485 - GFF798 0.44 -0.9
103,485 - GFF798 0.44 +0.2
103,485 - GFF798 0.44 +1.5
103,485 - GFF798 0.44 -0.4
103,485 - GFF798 0.44 -0.9
103,485 - GFF798 0.44 +0.2
103,485 - GFF798 0.44 -0.2
103,485 - GFF798 0.44 -1.3
103,485 - GFF798 0.44 -1.5
103,499 + GFF798 0.45 -0.3
103,499 + GFF798 0.45 +0.7
103,499 + GFF798 0.45 +0.0
103,499 + GFF798 0.45 +0.4
103,499 + GFF798 0.45 -2.4
103,500 - GFF798 0.45 -0.6
103,500 - GFF798 0.45 +0.9
103,500 - GFF798 0.45 -0.3
103,500 - GFF798 0.45 +0.2
103,500 - GFF798 0.45 -0.4
103,505 + GFF798 0.45 -0.7
103,506 - GFF798 0.45 +0.6
103,506 - GFF798 0.45 +0.3
103,700 + GFF798 0.57 -0.2
103,700 + GFF798 0.57 +0.1
103,700 + GFF798 0.57 -0.3
103,701 - GFF798 0.57 -0.7
103,701 - GFF798 0.57 +0.8
103,784 + GFF798 0.62 -0.5
103,785 - GFF798 0.62 +0.1
103,785 - GFF798 0.62 +0.1
103,785 - GFF798 0.62 +0.5
103,785 - GFF798 0.62 +1.3
103,799 + GFF798 0.63 -0.0
103,800 - GFF798 0.63 +0.1
103,841 + GFF798 0.66 -0.2
103,841 + GFF798 0.66 +0.0
103,841 + GFF798 0.66 +1.9
103,841 + GFF798 0.66 -0.3
103,841 + GFF798 0.66 -0.2
103,841 + GFF798 0.66 -1.1
103,842 - GFF798 0.66 -0.5
103,904 + GFF798 0.69 +0.2
103,904 + GFF798 0.69 -0.4
103,904 + GFF798 0.69 +1.0
104,006 + GFF798 0.76 +0.1
104,007 - GFF798 0.76 -0.3
104,007 - GFF798 0.76 +0.5
104,007 - GFF798 0.76 -0.5
104,007 - GFF798 0.76 -1.8
104,007 - GFF798 0.76 -0.5
104,054 + GFF798 0.79 -0.5
104,054 + GFF798 0.79 -1.0
104,054 + GFF798 0.79 -1.6
104,054 + GFF798 0.79 +1.5
104,054 + GFF798 0.79 +1.5
104,054 + GFF798 0.79 -1.1
104,054 + GFF798 0.79 -1.3
104,054 + GFF798 0.79 +0.4
104,054 + GFF798 0.79 +0.7
104,054 + GFF798 0.79 -0.9
104,054 + GFF798 0.79 +0.2
104,054 + GFF798 0.79 +0.1
104,054 + GFF798 0.79 -0.6
104,055 - GFF798 0.79 -1.2
104,055 - GFF798 0.79 -0.4
104,055 - GFF798 0.79 +0.5
104,055 - GFF798 0.79 -0.2
104,055 - GFF798 0.79 -1.1
104,055 - GFF798 0.79 -0.4
104,055 - GFF798 0.79 -1.0
104,175 - GFF798 0.86 -0.4
104,244 - -0.7
104,399 + -0.5
104,399 + +1.2
104,785 - GFF799 0.80 -1.0
104,868 + -0.6
104,868 + -0.1
104,868 + -0.6
104,869 - +0.8
104,869 - -0.4
104,869 - +0.2
104,949 + -1.4
104,950 - +1.8
104,970 + -0.6
104,983 + -1.1
104,983 + +1.2
104,983 + +0.4
104,984 - +0.9
104,984 - -0.4
104,984 - -0.7
104,984 - -0.5
104,984 - -0.8
105,183 + +1.1
105,183 + -1.9
105,183 + -1.6
105,183 + +1.3
105,183 + +0.3
105,183 + -0.2
105,183 + +0.8
105,183 + -0.1
105,183 + -0.4
105,183 + -0.6
105,183 + -0.4
105,183 + -0.8
105,184 - +2.5
105,184 - -0.2
105,184 - -0.5
105,184 - +1.2
105,184 - -0.5
105,184 - -0.6
105,184 - +0.1
105,184 - +0.1
105,184 - -0.1
105,184 - +0.5
105,184 - +0.5
105,291 + GFF800 0.16 +0.0
105,291 + GFF800 0.16 -1.1
105,291 + GFF800 0.16 -1.5
105,291 + GFF800 0.16 -1.1
105,291 + GFF800 0.16 +1.5
105,291 + GFF800 0.16 -0.8
105,291 + GFF800 0.16 +0.7
105,292 - GFF800 0.16 +0.2
105,472 - GFF800 0.25 -1.6

Or see this region's nucleotide sequence