Strain Fitness in Variovorax sp. SCN45 around GFF7359

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
6,014	+		GFF7358	0.12	-0.2
6,014	+		GFF7358	0.12	-1.6
6,015	-		GFF7358	0.12	-1.1
6,015	-		GFF7358	0.12	+0.2
6,203	+		GFF7358	0.32	-0.7
6,204	-		GFF7358	0.32	-0.1
6,204	-		GFF7358	0.32	+0.7
6,518	+		GFF7358	0.64	-1.1
6,519	-		GFF7358	0.64	+0.7
6,644	+		GFF7358	0.77	+0.0
6,695	+		GFF7358	0.82	+1.3
6,712	-		GFF7358	0.84	+0.6
6,734	+		GFF7358	0.86	-0.4
6,735	-		GFF7358	0.87	-0.4
6,742	+		GFF7358	0.87	-0.2
6,742	+		GFF7358	0.87	-0.2
6,743	-		GFF7358	0.87	-0.3
6,949	-		GFF7359	0.11	+0.1
6,949	-		GFF7359	0.11	-0.3
6,949	-		GFF7359	0.11	-0.7
6,961	+		GFF7359	0.12	-0.4
6,961	+		GFF7359	0.12	-1.9
6,962	-		GFF7359	0.12	-1.7
6,962	-		GFF7359	0.12	-0.6
6,962	-		GFF7359	0.12	-0.9
6,962	-		GFF7359	0.12	-0.1
6,962	-		GFF7359	0.12	-0.0
6,963	+		GFF7359	0.12	-0.1
6,964	-		GFF7359	0.12	-0.3
7,089	+		GFF7359	0.27	-0.9
7,089	+		GFF7359	0.27	+1.3
7,274	+		GFF7359	0.48	+0.2
7,274	+		GFF7359	0.48	-1.3
7,274	+		GFF7359	0.48	-1.0
7,275	-		GFF7359	0.48	+0.3
7,275	-		GFF7359	0.48	-0.8
7,275	-		GFF7359	0.48	+1.0
7,275	-		GFF7359	0.48	-0.2
7,291	+		GFF7359	0.50	-1.4
7,292	-		GFF7359	0.50	-0.2
7,415	+		GFF7359	0.64	-1.3
7,502	+		GFF7359	0.74	-0.6
7,502	+		GFF7359	0.74	-0.4
7,595	+		GFF7359	0.85	-1.0
7,595	+		GFF7359	0.85	-0.1
7,596	-		GFF7359	0.85	-1.6
7,644	+				-0.4
7,644	+				+0.4
7,644	+				-0.3
7,644	+				-0.1
7,644	+				-1.7
7,645	-				+2.0
7,645	-				-0.1
7,677	+				+0.6
7,677	+				-0.0
7,762	+				-1.1
7,762	+				-0.5
7,763	-				+0.0
7,763	-				-0.9
7,804	+				+0.5
7,805	-				-0.0
7,852	+				+0.7
7,853	-				-1.5
7,874	-				-1.5
7,966	+		GFF7360	0.18	-0.7
7,967	-		GFF7360	0.18	-0.1
8,014	+		GFF7360	0.22	+0.2
8,015	-		GFF7360	0.22	-0.2
8,015	-		GFF7360	0.22	-0.6
8,015	-		GFF7360	0.22	-0.8
8,137	+		GFF7360	0.33	+0.2
8,137	+		GFF7360	0.33	-0.8
8,138	-		GFF7360	0.33	-0.4
8,138	-		GFF7360	0.33	+0.7
8,197	+		GFF7360	0.38	-0.8
8,197	+		GFF7360	0.38	-2.6
8,198	-		GFF7360	0.38	-0.1
8,363	+		GFF7360	0.53	-0.2
8,364	-		GFF7360	0.53	-0.1
8,426	-		GFF7360	0.58	-0.1
8,627	+		GFF7360	0.76	+0.3
8,628	-		GFF7360	0.76	-1.4
8,690	-		GFF7360	0.81	-0.4
8,694	+		GFF7360	0.82	-0.3