Strain Fitness in Variovorax sp. SCN45 around GFF7228

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
8,144	+		GFF7226	0.77	-0.6
8,144	+		GFF7226	0.77	-0.7
8,144	+		GFF7226	0.77	+0.5
8,145	-		GFF7226	0.77	+0.4
8,145	-		GFF7226	0.77	+1.2
8,145	-		GFF7226	0.77	-0.3
8,638	+				-0.7
8,639	-				+0.4
8,703	+				+1.0
8,704	-				+0.6
8,875	+				+0.2
8,875	+				-0.1
8,876	-				+0.7
9,127	+		GFF7228	0.18	+0.8
9,127	+		GFF7228	0.18	+0.8
9,128	-		GFF7228	0.18	-0.8
9,128	-		GFF7228	0.18	-1.4
9,537	-		GFF7228	0.40	+2.2
9,538	+		GFF7228	0.41	+1.8
9,539	-		GFF7228	0.41	-0.6
10,078	+		GFF7228	0.70	-0.7
10,079	-		GFF7228	0.70	-0.4
10,291	+		GFF7228	0.81	+1.3
10,292	-		GFF7228	0.81	+0.1
10,427	-		GFF7228	0.89	+0.9
10,478	-				+0.1
10,498	+				+0.3
10,498	+				+0.4
10,498	+				+0.2
10,498	+				-0.4
10,498	+				-0.2
10,498	+				+0.5
10,498	+				+0.6
10,498	+				-1.7
10,499	-				+0.9
10,499	-				+2.1
10,540	+				+2.2
10,541	-				-0.8
10,743	+				-1.6
10,743	+				+0.4
10,743	+				-0.9
10,744	-				-0.3