Strain Fitness in Variovorax sp. SCN45 around GFF7186

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
2,671	-				+0.7
2,671	-				+0.2
2,699	-				-0.1
2,706	+				+0.4
2,707	-				+0.0
2,707	-				-0.3
2,707	-				+0.4
2,745	+				-0.1
2,909	+				+1.2
2,910	-				-1.5
2,910	-				+0.1
2,910	-				+0.5
2,910	-				-0.8
3,030	-				+0.8
3,082	+				+1.3
3,099	+				-0.2
3,099	+				+0.1
3,297	+		GFF7185	0.54	-0.5
3,297	+		GFF7185	0.54	-0.5
3,298	-		GFF7185	0.54	-1.2
3,298	-		GFF7185	0.54	+1.0
3,300	-		GFF7185	0.55	-0.1
3,396	+		GFF7185	0.83	-0.5
3,398	+		GFF7185	0.84	-1.3
3,399	-		GFF7185	0.84	+0.8
3,478	+				+0.0
3,478	+				+0.1
3,478	+				+0.4
3,542	+				+0.1
3,636	-		GFF7186	0.13	-0.5
3,826	+		GFF7186	0.40	+0.5
3,885	-		GFF7186	0.48	+1.1
3,917	+		GFF7186	0.52	-0.1
4,007	+		GFF7186	0.65	+0.6
4,008	-		GFF7186	0.65	-0.3
4,011	+		GFF7186	0.65	+0.2
4,085	+		GFF7186	0.76	+0.3
4,152	-		GFF7186	0.85	+0.3
4,165	-		GFF7186	0.87	-0.1
4,253	-				-0.2
4,321	+				+1.8
4,322	-				+0.3
4,322	-				-0.2
4,633	+				-0.1
4,633	+				-0.8
4,677	+				-2.1
4,677	+				+0.8
4,678	-				-0.8
4,678	-				+0.2
4,899	+		GFF7188	0.24	-1.0
4,900	-		GFF7188	0.24	-0.6
5,149	-		GFF7188	0.51	+0.2
5,149	-		GFF7188	0.51	+0.6