Strain Fitness in Variovorax sp. SCN45 around GFF7160

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
23,615	+		GFF7158	0.73	-0.1
23,615	+		GFF7158	0.73	-1.9
23,615	+		GFF7158	0.73	-2.0
23,615	+		GFF7158	0.73	+1.2
23,615	+		GFF7158	0.73	+0.6
23,615	+		GFF7158	0.73	+0.6
23,615	+		GFF7158	0.73	-0.3
23,616	-		GFF7158	0.73	-1.9
23,616	-		GFF7158	0.73	-1.1
23,616	-		GFF7158	0.73	-0.8
23,616	-		GFF7158	0.73	-0.1
23,639	+		GFF7158	0.76	-0.6
23,639	+		GFF7158	0.76	+0.2
23,639	+		GFF7158	0.76	-0.2
23,639	+		GFF7158	0.76	-0.4
23,639	+		GFF7158	0.76	-0.6
23,640	-		GFF7158	0.76	-0.6
23,640	-		GFF7158	0.76	-0.7
23,640	-		GFF7158	0.76	+1.6
23,640	-		GFF7158	0.76	-1.5
23,640	-		GFF7158	0.76	-1.1
23,640	-		GFF7158	0.76	-0.4
23,807	+				-0.3
23,808	-				-0.8
23,808	-				-0.2
23,808	-				+0.5
23,830	-				-0.8
24,077	-		GFF7159	0.40	+0.8
24,115	+		GFF7159	0.46	-0.1
24,115	+		GFF7159	0.46	-0.5
24,115	+		GFF7159	0.46	-0.2
24,115	+		GFF7159	0.46	+1.0
24,115	+		GFF7159	0.46	-0.6
24,115	+		GFF7159	0.46	-0.5
24,115	+		GFF7159	0.46	-0.1
24,115	+		GFF7159	0.46	+0.6
24,115	+		GFF7159	0.46	-1.2
24,115	+		GFF7159	0.46	+0.2
24,115	+		GFF7159	0.46	-0.9
24,115	+		GFF7159	0.46	-0.8
24,115	+		GFF7159	0.46	+0.1
24,115	+		GFF7159	0.46	-0.2
24,115	+		GFF7159	0.46	-0.0
24,116	-		GFF7159	0.46	-1.4
24,116	-		GFF7159	0.46	-0.7
24,116	-		GFF7159	0.46	+0.2
24,116	-		GFF7159	0.46	-2.1
24,116	-		GFF7159	0.46	-1.8
24,116	-		GFF7159	0.46	-1.3
24,116	-		GFF7159	0.46	-0.4
24,116	-		GFF7159	0.46	-0.2
24,116	-		GFF7159	0.46	-0.7
24,116	-		GFF7159	0.46	-1.5
24,116	-		GFF7159	0.46	+0.4
24,116	-		GFF7159	0.46	+0.5
24,116	-		GFF7159	0.46	-1.0
24,163	+		GFF7159	0.54	-0.2
24,164	-		GFF7159	0.54	-1.0
24,164	-		GFF7159	0.54	-0.3
24,696	+		GFF7160	0.57	+0.1
24,696	+		GFF7160	0.57	+0.8
24,871	+				-1.1
24,872	-				-0.5
24,895	-				-0.5
24,996	+				-0.7
25,085	+		GFF7161	0.16	-0.4
25,238	-		GFF7161	0.32	+0.8
25,245	-		GFF7161	0.33	+0.0
25,245	-		GFF7161	0.33	-2.1
25,407	+		GFF7161	0.50	-1.1
25,407	+		GFF7161	0.50	-0.2
25,407	+		GFF7161	0.50	-0.6
25,407	+		GFF7161	0.50	+0.1
25,407	+		GFF7161	0.50	-0.2
25,407	+		GFF7161	0.50	+0.7
25,407	+		GFF7161	0.50	-0.1
25,407	+		GFF7161	0.50	-0.3
25,407	+		GFF7161	0.50	+0.5
25,407	+		GFF7161	0.50	-0.2
25,407	+		GFF7161	0.50	-1.8
25,407	+		GFF7161	0.50	-1.5
25,407	+		GFF7161	0.50	-1.2
25,407	+		GFF7161	0.50	-0.2
25,407	+		GFF7161	0.50	-2.0
25,407	+		GFF7161	0.50	+0.8
25,407	+		GFF7161	0.50	-0.1
25,407	+		GFF7161	0.50	-1.0
25,407	+		GFF7161	0.50	+0.8
25,407	+		GFF7161	0.50	+0.4
25,408	-		GFF7161	0.50	-0.9
25,408	-		GFF7161	0.50	-0.6
25,408	-		GFF7161	0.50	-0.9
25,408	-		GFF7161	0.50	-1.6
25,408	-		GFF7161	0.50	+0.1
25,408	-		GFF7161	0.50	+0.7
25,408	-		GFF7161	0.50	-0.3
25,408	-		GFF7161	0.50	-0.8
25,408	-		GFF7161	0.50	+1.5
25,408	-		GFF7161	0.50	-0.6
25,408	-		GFF7161	0.50	-0.2
25,408	-		GFF7161	0.50	+0.2
25,408	-		GFF7161	0.50	-0.1
25,408	-		GFF7161	0.50	-0.2
25,408	-		GFF7161	0.50	-1.0
25,408	-		GFF7161	0.50	-0.8
25,408	-		GFF7161	0.50	-0.8
25,408	-		GFF7161	0.50	-0.3
25,408	-		GFF7161	0.50	-0.1
25,408	-		GFF7161	0.50	-0.7
25,408	-		GFF7161	0.50	-0.3
25,408	-		GFF7161	0.50	-0.6
25,408	-		GFF7161	0.50	-0.0
25,408	-		GFF7161	0.50	-0.7
25,408	-		GFF7161	0.50	+0.3
25,408	-		GFF7161	0.50	-0.7
25,408	-		GFF7161	0.50	+0.8
25,461	+		GFF7161	0.56	+0.5
25,461	+		GFF7161	0.56	-0.5
25,461	+		GFF7161	0.56	-0.5
25,461	+		GFF7161	0.56	-0.2
25,461	+		GFF7161	0.56	-0.3
25,461	+		GFF7161	0.56	-1.3
25,461	+		GFF7161	0.56	-0.2
25,461	+		GFF7161	0.56	-0.0
25,461	+		GFF7161	0.56	-0.6
25,461	+		GFF7161	0.56	-0.7
25,461	+		GFF7161	0.56	+0.0
25,461	+		GFF7161	0.56	-0.1
25,461	+		GFF7161	0.56	-2.2
25,461	+		GFF7161	0.56	+0.6
25,461	+		GFF7161	0.56	+1.8
25,461	+		GFF7161	0.56	-0.2
25,461	+		GFF7161	0.56	+0.1
25,461	+		GFF7161	0.56	-0.6
25,461	+		GFF7161	0.56	+0.8
25,461	+		GFF7161	0.56	-0.4
25,461	+		GFF7161	0.56	+0.1
25,461	+		GFF7161	0.56	-0.3
25,461	+		GFF7161	0.56	-0.5
25,461	+		GFF7161	0.56	-1.9
25,461	+		GFF7161	0.56	-1.5
25,461	+		GFF7161	0.56	-0.6
25,462	-		GFF7161	0.56	-0.7
25,462	-		GFF7161	0.56	-0.4
25,462	-		GFF7161	0.56	+1.4
25,462	-		GFF7161	0.56	-0.8
25,462	-		GFF7161	0.56	+0.9
25,462	-		GFF7161	0.56	-1.2
25,462	-		GFF7161	0.56	-1.3
25,462	-		GFF7161	0.56	-1.6
25,462	-		GFF7161	0.56	-1.6
25,462	-		GFF7161	0.56	+0.6
25,462	-		GFF7161	0.56	-0.6
25,462	-		GFF7161	0.56	-0.5
25,462	-		GFF7161	0.56	-0.1
25,462	-		GFF7161	0.56	+0.4
25,462	-		GFF7161	0.56	+0.1
25,462	-		GFF7161	0.56	-0.6
25,462	-		GFF7161	0.56	-0.4
25,462	-		GFF7161	0.56	+0.0
25,462	-		GFF7161	0.56	+0.7
25,462	-		GFF7161	0.56	-0.6
25,462	-		GFF7161	0.56	+1.2
25,462	-		GFF7161	0.56	+0.1
25,462	-		GFF7161	0.56	+0.0
25,462	-		GFF7161	0.56	-1.6
25,462	-		GFF7161	0.56	+0.1
25,462	-		GFF7161	0.56	-0.5
25,462	-		GFF7161	0.56	-0.0
25,462	-		GFF7161	0.56	-0.6
25,462	-		GFF7161	0.56	-0.3
25,520	-		GFF7161	0.62	+0.0
25,574	+		GFF7161	0.68	-0.3
25,574	+		GFF7161	0.68	-1.1
25,574	+		GFF7161	0.68	-0.5
25,575	-		GFF7161	0.68	-0.3
25,575	-		GFF7161	0.68	+0.2
25,575	-		GFF7161	0.68	-0.4
25,607	+		GFF7161	0.71	-0.7
25,607	+		GFF7161	0.71	-0.1
25,608	-		GFF7161	0.71	-0.4
25,608	-		GFF7161	0.71	-1.3
25,608	-		GFF7161	0.71	+0.2
25,617	-		GFF7161	0.72	-0.1
25,731	+		GFF7161	0.84	+0.4
25,731	+		GFF7161	0.84	-0.5
25,731	+		GFF7161	0.84	-1.2
25,731	+		GFF7161	0.84	-0.6
25,731	+		GFF7161	0.84	-0.4
25,731	+		GFF7161	0.84	-0.2
25,731	+		GFF7161	0.84	+0.7
25,731	+		GFF7161	0.84	-1.3
25,731	+		GFF7161	0.84	-0.2
25,731	+		GFF7161	0.84	-0.8
25,732	-		GFF7161	0.84	-0.8
25,732	-		GFF7161	0.84	-0.6
25,732	-		GFF7161	0.84	-0.2
25,732	-		GFF7161	0.84	-0.8
25,732	-		GFF7161	0.84	+1.2
25,732	-		GFF7161	0.84	-0.7
25,732	-		GFF7161	0.84	+0.4
25,732	-		GFF7161	0.84	+0.1
25,737	+		GFF7161	0.85	-0.5
25,737	+		GFF7161	0.85	+1.8
25,738	-		GFF7161	0.85	-0.0
25,738	-		GFF7161	0.85	-0.3
25,738	-		GFF7161	0.85	-2.0
25,738	-		GFF7161	0.85	+0.2
25,738	-		GFF7161	0.85	+0.5
25,738	-		GFF7161	0.85	+0.2
25,764	+		GFF7161	0.88	-1.0
25,764	+		GFF7161	0.88	-0.7
25,816	+				-0.2
25,816	+				-0.6
25,816	+				+0.2
25,816	+				-1.1
25,817	-				+0.4
25,817	-				+0.0
25,817	-				-0.3
25,817	-				-1.2
25,817	-				+0.1
25,817	-				+0.0
25,819	+				+1.1
25,819	+				-0.3
25,819	+				+0.1
25,819	+				-1.3
25,819	+				-1.0
25,819	+				-0.2
25,820	-				-0.3
25,820	-				-0.8
25,820	-				+1.5
25,820	-				+0.0
25,820	-				-2.8
25,820	-				+0.2
25,820	-				-0.6
25,820	-				+0.4
25,820	-				-0.8
25,820	-				-0.2
25,820	-				-0.9
25,820	-				+0.4
25,820	-				-0.9