Strain Fitness in Variovorax sp. SCN45 around GFF7159

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
22,994	+				-1.1
22,994	+				+0.2
22,994	+				+1.1
22,994	+				-0.4
22,994	+				-0.2
22,994	+				+1.1
22,994	+				+0.3
22,995	-				+0.8
22,995	-				+0.5
22,995	-				-0.1
22,995	-				-0.5
23,087	+		GFF7158	0.11	+0.5
23,087	+		GFF7158	0.11	-0.4
23,087	+		GFF7158	0.11	+0.4
23,087	+		GFF7158	0.11	-0.4
23,087	+		GFF7158	0.11	-0.3
23,087	+		GFF7158	0.11	+0.7
23,087	+		GFF7158	0.11	+0.3
23,088	-		GFF7158	0.11	-0.2
23,297	+		GFF7158	0.36	-0.2
23,297	+		GFF7158	0.36	+0.8
23,298	-		GFF7158	0.36	-0.4
23,336	+		GFF7158	0.40	-0.8
23,336	+		GFF7158	0.40	+0.1
23,336	+		GFF7158	0.40	+0.8
23,336	+		GFF7158	0.40	+1.8
23,336	+		GFF7158	0.40	+0.4
23,336	+		GFF7158	0.40	-1.7
23,336	+		GFF7158	0.40	+0.2
23,336	+		GFF7158	0.40	-0.3
23,336	+		GFF7158	0.40	-0.2
23,336	+		GFF7158	0.40	-1.2
23,336	+		GFF7158	0.40	-0.0
23,336	+		GFF7158	0.40	-2.4
23,337	-		GFF7158	0.40	-0.5
23,337	-		GFF7158	0.40	-1.5
23,337	-		GFF7158	0.40	+0.5
23,337	-		GFF7158	0.40	+0.6
23,337	-		GFF7158	0.40	+1.7
23,337	-		GFF7158	0.40	-0.1
23,337	-		GFF7158	0.40	-0.8
23,337	-		GFF7158	0.40	-0.7
23,337	-		GFF7158	0.40	+0.1
23,337	-		GFF7158	0.40	-1.0
23,337	-		GFF7158	0.40	-0.1
23,438	+		GFF7158	0.52	-0.1
23,438	+		GFF7158	0.52	-0.6
23,438	+		GFF7158	0.52	-0.7
23,438	+		GFF7158	0.52	-0.3
23,438	+		GFF7158	0.52	+0.4
23,438	+		GFF7158	0.52	-0.9
23,438	+		GFF7158	0.52	-0.2
23,438	+		GFF7158	0.52	-0.1
23,438	+		GFF7158	0.52	-1.0
23,438	+		GFF7158	0.52	+0.7
23,438	+		GFF7158	0.52	-0.2
23,438	+		GFF7158	0.52	+0.0
23,438	+		GFF7158	0.52	+0.8
23,438	+		GFF7158	0.52	+0.5
23,438	+		GFF7158	0.52	-0.1
23,438	+		GFF7158	0.52	-0.0
23,439	-		GFF7158	0.52	+1.8
23,439	-		GFF7158	0.52	-1.6
23,439	-		GFF7158	0.52	+1.5
23,439	-		GFF7158	0.52	+0.2
23,439	-		GFF7158	0.52	+0.4
23,439	-		GFF7158	0.52	+1.2
23,439	-		GFF7158	0.52	-0.2
23,439	-		GFF7158	0.52	+1.0
23,439	-		GFF7158	0.52	+0.2
23,439	-		GFF7158	0.52	+0.4
23,439	-		GFF7158	0.52	-1.1
23,439	-		GFF7158	0.52	-0.8
23,439	-		GFF7158	0.52	+0.5
23,439	-		GFF7158	0.52	-0.5
23,439	-		GFF7158	0.52	-0.3
23,439	-		GFF7158	0.52	-0.8
23,615	+		GFF7158	0.73	-0.1
23,615	+		GFF7158	0.73	-1.9
23,615	+		GFF7158	0.73	-2.0
23,615	+		GFF7158	0.73	+1.2
23,615	+		GFF7158	0.73	+0.6
23,615	+		GFF7158	0.73	+0.6
23,615	+		GFF7158	0.73	-0.3
23,616	-		GFF7158	0.73	-1.9
23,616	-		GFF7158	0.73	-1.1
23,616	-		GFF7158	0.73	-0.8
23,616	-		GFF7158	0.73	-0.1
23,639	+		GFF7158	0.76	-0.6
23,639	+		GFF7158	0.76	+0.2
23,639	+		GFF7158	0.76	-0.2
23,639	+		GFF7158	0.76	-0.4
23,639	+		GFF7158	0.76	-0.6
23,640	-		GFF7158	0.76	-0.6
23,640	-		GFF7158	0.76	-0.7
23,640	-		GFF7158	0.76	+1.6
23,640	-		GFF7158	0.76	-1.5
23,640	-		GFF7158	0.76	-1.1
23,640	-		GFF7158	0.76	-0.4
23,807	+				-0.3
23,808	-				-0.8
23,808	-				-0.2
23,808	-				+0.5
23,830	-				-0.8
24,077	-		GFF7159	0.40	+0.8
24,115	+		GFF7159	0.46	-0.1
24,115	+		GFF7159	0.46	-0.5
24,115	+		GFF7159	0.46	-0.2
24,115	+		GFF7159	0.46	+1.0
24,115	+		GFF7159	0.46	-0.6
24,115	+		GFF7159	0.46	-0.5
24,115	+		GFF7159	0.46	-0.1
24,115	+		GFF7159	0.46	+0.6
24,115	+		GFF7159	0.46	-1.2
24,115	+		GFF7159	0.46	+0.2
24,115	+		GFF7159	0.46	-0.9
24,115	+		GFF7159	0.46	-0.8
24,115	+		GFF7159	0.46	+0.1
24,115	+		GFF7159	0.46	-0.2
24,115	+		GFF7159	0.46	-0.0
24,116	-		GFF7159	0.46	-1.4
24,116	-		GFF7159	0.46	-0.7
24,116	-		GFF7159	0.46	+0.2
24,116	-		GFF7159	0.46	-2.1
24,116	-		GFF7159	0.46	-1.8
24,116	-		GFF7159	0.46	-1.3
24,116	-		GFF7159	0.46	-0.4
24,116	-		GFF7159	0.46	-0.2
24,116	-		GFF7159	0.46	-0.7
24,116	-		GFF7159	0.46	-1.5
24,116	-		GFF7159	0.46	+0.4
24,116	-		GFF7159	0.46	+0.5
24,116	-		GFF7159	0.46	-1.0
24,163	+		GFF7159	0.54	-0.2
24,164	-		GFF7159	0.54	-1.0
24,164	-		GFF7159	0.54	-0.3
24,696	+		GFF7160	0.57	+0.1
24,696	+		GFF7160	0.57	+0.8
24,871	+				-1.1
24,872	-				-0.5
24,895	-				-0.5
24,996	+				-0.7
25,085	+		GFF7161	0.16	-0.4
25,238	-		GFF7161	0.32	+0.8
25,245	-		GFF7161	0.33	+0.0
25,245	-		GFF7161	0.33	-2.1
25,407	+		GFF7161	0.50	-1.1
25,407	+		GFF7161	0.50	-0.2
25,407	+		GFF7161	0.50	-0.6
25,407	+		GFF7161	0.50	+0.1
25,407	+		GFF7161	0.50	-0.2
25,407	+		GFF7161	0.50	+0.7
25,407	+		GFF7161	0.50	-0.1
25,407	+		GFF7161	0.50	-0.3
25,407	+		GFF7161	0.50	+0.5
25,407	+		GFF7161	0.50	-0.2
25,407	+		GFF7161	0.50	-1.8
25,407	+		GFF7161	0.50	-1.5
25,407	+		GFF7161	0.50	-1.2
25,407	+		GFF7161	0.50	-0.2
25,407	+		GFF7161	0.50	-2.0
25,407	+		GFF7161	0.50	+0.8
25,407	+		GFF7161	0.50	-0.1
25,407	+		GFF7161	0.50	-1.0
25,407	+		GFF7161	0.50	+0.8
25,407	+		GFF7161	0.50	+0.4
25,408	-		GFF7161	0.50	-0.9
25,408	-		GFF7161	0.50	-0.6
25,408	-		GFF7161	0.50	-0.9
25,408	-		GFF7161	0.50	-1.6
25,408	-		GFF7161	0.50	+0.1
25,408	-		GFF7161	0.50	+0.7
25,408	-		GFF7161	0.50	-0.3
25,408	-		GFF7161	0.50	-0.8
25,408	-		GFF7161	0.50	+1.5
25,408	-		GFF7161	0.50	-0.6
25,408	-		GFF7161	0.50	-0.2
25,408	-		GFF7161	0.50	+0.2
25,408	-		GFF7161	0.50	-0.1
25,408	-		GFF7161	0.50	-0.2
25,408	-		GFF7161	0.50	-1.0
25,408	-		GFF7161	0.50	-0.8
25,408	-		GFF7161	0.50	-0.8
25,408	-		GFF7161	0.50	-0.3
25,408	-		GFF7161	0.50	-0.1
25,408	-		GFF7161	0.50	-0.7
25,408	-		GFF7161	0.50	-0.3
25,408	-		GFF7161	0.50	-0.6
25,408	-		GFF7161	0.50	-0.0
25,408	-		GFF7161	0.50	-0.7
25,408	-		GFF7161	0.50	+0.3
25,408	-		GFF7161	0.50	-0.7
25,408	-		GFF7161	0.50	+0.8