Strain Fitness in Variovorax sp. SCN45 around GFF7086

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
7,699	+		GFF7085	0.19	-0.0
7,741	-		GFF7085	0.23	+0.3
7,798	+		GFF7085	0.29	-0.6
7,798	+		GFF7085	0.29	-2.1
7,798	+		GFF7085	0.29	+0.4
7,798	+		GFF7085	0.29	-0.5
7,799	-		GFF7085	0.29	-0.8
7,838	+		GFF7085	0.33	-0.3
7,839	-		GFF7085	0.33	+0.5
7,839	-		GFF7085	0.33	-1.9
7,868	+		GFF7085	0.36	+0.2
7,869	-		GFF7085	0.36	-0.8
7,926	+		GFF7085	0.42	-0.5
7,926	+		GFF7085	0.42	-0.1
7,926	+		GFF7085	0.42	+0.1
7,926	+		GFF7085	0.42	-0.2
7,926	+		GFF7085	0.42	-0.7
7,927	-		GFF7085	0.42	+0.7
7,927	-		GFF7085	0.42	-0.9
7,927	-		GFF7085	0.42	-0.3
7,927	-		GFF7085	0.42	+0.2
7,927	-		GFF7085	0.42	-0.5
7,927	-		GFF7085	0.42	-0.3
7,927	-		GFF7085	0.42	-2.5
7,927	-		GFF7085	0.42	-0.2
7,927	-		GFF7085	0.42	-0.5
7,927	-		GFF7085	0.42	+0.1
7,927	-		GFF7085	0.42	-0.0
7,927	-		GFF7085	0.42	-0.2
7,945	+		GFF7085	0.44	-0.7
7,946	-		GFF7085	0.44	+0.5
7,946	-		GFF7085	0.44	-1.1
7,979	+		GFF7085	0.47	-1.7
7,979	+		GFF7085	0.47	-0.5
7,980	-		GFF7085	0.47	+0.1
7,980	-		GFF7085	0.47	-0.0
8,045	+		GFF7085	0.53	-1.9
8,045	+		GFF7085	0.53	-0.8
8,045	+		GFF7085	0.53	+0.3
8,045	+		GFF7085	0.53	+0.2
8,046	-		GFF7085	0.54	+0.2
8,046	-		GFF7085	0.54	-0.7
8,046	-		GFF7085	0.54	-0.4
8,046	-		GFF7085	0.54	+0.0
8,046	-		GFF7085	0.54	+0.1
8,046	-		GFF7085	0.54	-0.4
8,046	-		GFF7085	0.54	-0.6
8,046	-		GFF7085	0.54	-0.1
8,085	-		GFF7085	0.57	-0.1
8,114	+		GFF7085	0.60	+0.4
8,114	+		GFF7085	0.60	-0.6
8,115	-		GFF7085	0.60	-0.1
8,115	-		GFF7085	0.60	-0.7
8,115	-		GFF7085	0.60	-1.0
8,148	+		GFF7085	0.64	+0.2
8,148	+		GFF7085	0.64	-0.7
8,148	+		GFF7085	0.64	-0.2
8,148	+		GFF7085	0.64	+0.5
8,149	-		GFF7085	0.64	-1.5
8,149	-		GFF7085	0.64	-0.1
8,149	-		GFF7085	0.64	+0.2
8,176	+		GFF7085	0.66	-3.2
8,214	+		GFF7085	0.70	-1.0
8,215	-		GFF7085	0.70	+0.1
8,215	-		GFF7085	0.70	-1.3
8,215	-		GFF7085	0.70	-0.6
8,215	-		GFF7085	0.70	+0.6
8,215	-		GFF7085	0.70	-0.8
8,300	+		GFF7085	0.79	-0.4
8,300	+		GFF7085	0.79	+0.4
8,300	+		GFF7085	0.79	-2.2
8,301	-		GFF7085	0.79	-0.2
8,424	+				-0.5
8,424	+				-0.4
8,424	+				+1.1
8,424	+				-0.2
8,424	+				-0.5
8,425	-				-0.8
8,425	-				+0.6
8,425	-				-0.2
8,425	-				+0.6
8,425	-				-1.5
8,425	-				-0.4
8,425	-				+0.5
8,425	-				+0.7
8,425	-				-1.8
8,425	-				-1.2
8,425	-				-1.0
8,446	+				-0.5
8,446	+				-0.9
8,446	+				-1.2
8,447	-				+0.4
8,542	+				+0.2
8,542	+				+0.2
8,542	+				-1.4
8,542	+				-0.4
8,542	+				-0.5
8,543	-				-0.3
8,543	-				-0.8
8,543	-				-0.8
8,611	-				-2.1
8,651	-				+0.2
8,657	+				-0.6
8,658	-				-0.7
8,658	-				-0.2
8,680	+				-0.2
8,680	+				-0.7
8,680	+				-0.0
8,681	-				+1.1
8,681	-				+1.0
8,873	+		GFF7086	0.28	-1.2
8,874	-		GFF7086	0.28	-0.1
8,874	-		GFF7086	0.28	+0.4
8,942	+		GFF7086	0.37	+0.1
8,942	+		GFF7086	0.37	-0.3
8,942	+		GFF7086	0.37	+0.3
8,943	-		GFF7086	0.37	-0.1
8,943	-		GFF7086	0.37	-0.8
8,975	+		GFF7086	0.41	-1.1
8,976	-		GFF7086	0.41	-0.7
8,997	+		GFF7086	0.44	-0.8
8,997	+		GFF7086	0.44	-0.8
9,023	+		GFF7086	0.47	-1.3
9,023	+		GFF7086	0.47	+1.2
9,023	+		GFF7086	0.47	-0.4
9,024	-		GFF7086	0.48	+0.3
9,024	-		GFF7086	0.48	+0.4
9,024	-		GFF7086	0.48	-0.3
9,024	-		GFF7086	0.48	+0.8
9,024	-		GFF7086	0.48	+1.1
9,039	+		GFF7086	0.49	-0.3
9,072	+		GFF7086	0.54	+1.6
9,073	-		GFF7086	0.54	-0.5
9,278	+		GFF7086	0.80	-0.9
9,278	+		GFF7086	0.80	-0.1
9,278	+		GFF7086	0.80	+0.1
9,278	+		GFF7086	0.80	-0.1
9,278	+		GFF7086	0.80	-1.1
9,278	+		GFF7086	0.80	-0.2
9,278	+		GFF7086	0.80	-1.5
9,278	+		GFF7086	0.80	-0.8
9,278	+		GFF7086	0.80	+0.4
9,278	+		GFF7086	0.80	+0.5
9,278	+		GFF7086	0.80	-0.7
9,278	+		GFF7086	0.80	+0.5
9,278	+		GFF7086	0.80	+0.8
9,278	+		GFF7086	0.80	-1.1
9,278	+		GFF7086	0.80	-0.4
9,278	+		GFF7086	0.80	-0.5
9,278	+		GFF7086	0.80	-0.5
9,279	-		GFF7086	0.80	+0.6
9,279	-		GFF7086	0.80	+1.1
9,279	-		GFF7086	0.80	-0.7
9,279	-		GFF7086	0.80	+2.0
9,279	-		GFF7086	0.80	-0.4
9,279	-		GFF7086	0.80	+0.9
9,290	+		GFF7086	0.82	+0.6
9,452	+				-1.2
9,452	+				-0.1
9,453	-				-0.7
9,456	+				-0.3
9,456	+				-0.6
9,456	+				-0.2
9,457	-				-0.5
9,742	+		GFF7087	0.19	-0.2
9,742	+		GFF7087	0.19	+0.3
9,742	+		GFF7087	0.19	-1.0
9,742	+		GFF7087	0.19	+0.6
9,743	-		GFF7087	0.19	+0.2
9,743	-		GFF7087	0.19	+0.1
9,743	-		GFF7087	0.19	+0.2
9,743	-		GFF7087	0.19	+0.7
9,743	-		GFF7087	0.19	-0.9
9,756	+		GFF7087	0.21	-0.1
9,756	+		GFF7087	0.21	-1.9
9,756	+		GFF7087	0.21	-0.0
9,756	+		GFF7087	0.21	-0.1
9,756	+		GFF7087	0.21	+0.2
9,757	-		GFF7087	0.21	-0.8
9,757	-		GFF7087	0.21	+0.6
9,757	-		GFF7087	0.21	-0.6
9,757	-		GFF7087	0.21	+0.2
9,802	+		GFF7087	0.25	-0.5
9,802	+		GFF7087	0.25	-0.1
9,803	-		GFF7087	0.25	-1.5
9,853	-		GFF7087	0.30	-0.7
9,853	-		GFF7087	0.30	+0.0
9,853	-		GFF7087	0.30	-0.0
9,853	-		GFF7087	0.30	-0.8
9,987	+		GFF7087	0.43	-0.3
9,987	+		GFF7087	0.43	+0.2
9,987	+		GFF7087	0.43	-0.5
9,987	+		GFF7087	0.43	+1.8
9,987	+		GFF7087	0.43	-0.3
9,988	-		GFF7087	0.43	-3.0
9,988	-		GFF7087	0.43	-0.4
9,988	-		GFF7087	0.43	+0.6
9,988	-		GFF7087	0.43	-0.5
10,004	+		GFF7087	0.45	-2.2
10,005	-		GFF7087	0.45	-0.1
10,029	+		GFF7087	0.47	-1.1
10,030	-		GFF7087	0.48	-0.1
10,030	-		GFF7087	0.48	+0.2
10,030	-		GFF7087	0.48	+0.6
10,030	-		GFF7087	0.48	-0.7
10,030	-		GFF7087	0.48	-0.1
10,331	+		GFF7087	0.77	-0.8
10,331	+		GFF7087	0.77	-0.5
10,331	+		GFF7087	0.77	-0.3
10,331	+		GFF7087	0.77	-0.3
10,331	+		GFF7087	0.77	+0.3
10,331	+		GFF7087	0.77	-0.3
10,332	-		GFF7087	0.77	+0.1
10,332	-		GFF7087	0.77	-0.5
10,332	-		GFF7087	0.77	-1.9
10,332	-		GFF7087	0.77	-0.2
10,332	-		GFF7087	0.77	-0.1