Strain Fitness in Variovorax sp. SCN45 around GFF6878

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
9,429	+		GFF6876	0.64	-2.2
9,457	+		GFF6876	0.66	-1.2
9,457	+		GFF6876	0.66	-3.2
9,501	+		GFF6876	0.70	-0.9
9,501	+		GFF6876	0.70	-1.2
9,501	+		GFF6876	0.70	-3.8
9,501	+		GFF6876	0.70	+0.8
9,501	+		GFF6876	0.70	-1.8
9,501	+		GFF6876	0.70	-4.2
9,501	+		GFF6876	0.70	-1.8
9,501	+		GFF6876	0.70	-1.7
9,501	+		GFF6876	0.70	-1.7
9,501	+		GFF6876	0.70	-1.2
9,501	+		GFF6876	0.70	-0.8
9,501	+		GFF6876	0.70	-3.3
9,501	+		GFF6876	0.70	-3.5
9,501	+		GFF6876	0.70	-1.0
9,501	+		GFF6876	0.70	-0.2
9,502	-		GFF6876	0.70	-4.4
9,502	-		GFF6876	0.70	-1.5
9,502	-		GFF6876	0.70	-2.0
9,502	-		GFF6876	0.70	-2.3
9,502	-		GFF6876	0.70	-2.5
9,502	-		GFF6876	0.70	-0.5
9,502	-		GFF6876	0.70	-1.5
9,502	-		GFF6876	0.70	-2.0
9,502	-		GFF6876	0.70	-3.7
9,502	-		GFF6876	0.70	-1.5
9,502	-		GFF6876	0.70	-2.2
9,502	-		GFF6876	0.70	-1.0
9,502	-		GFF6876	0.70	-3.5
9,571	-		GFF6876	0.77	-1.5
9,687	+		GFF6876	0.87	-3.2
9,688	-		GFF6876	0.87	-1.7
10,051	-				-2.2
10,121	-				-1.8
10,121	-				-3.2
10,126	+				-0.8
10,126	+				-2.1
10,126	+				-1.2
10,127	-				-0.5
10,129	+				-0.2
10,129	+				-0.8
10,129	+				-1.0
10,256	+				-2.7
10,256	+				-2.7
10,332	+				-3.0
10,332	+				-1.4
10,332	+				-1.4
10,332	+				-0.7
10,333	-				-3.2
10,333	-				-2.8
10,335	+				-2.5
10,335	+				-2.8
10,336	-				-3.2
10,336	-				-1.0
10,336	-				-1.4
10,336	-				-2.6
10,346	+				+0.4
10,347	-				-1.5
10,347	-				-2.6
10,353	+				-1.7
10,354	-				-2.8
10,358	-				-1.8
10,437	+				-1.1
10,437	+				-1.2
10,437	+				+1.8
10,437	+				+0.0
10,437	+				-1.0
10,437	+				-1.4
10,437	+				-1.9
10,437	+				-0.8
10,437	+				-1.5
10,438	-				-3.1
10,438	-				-1.8
10,438	-				-3.0
10,438	-				-1.3
10,442	+				-0.2
10,504	+		GFF6878	0.13	-0.8
10,504	+		GFF6878	0.13	-3.4
10,504	+		GFF6878	0.13	-1.0
10,504	+		GFF6878	0.13	-2.0
10,504	+		GFF6878	0.13	-0.8
10,505	-		GFF6878	0.13	-1.7
10,505	-		GFF6878	0.13	-2.4
10,505	-		GFF6878	0.13	-2.6
10,505	-		GFF6878	0.13	-2.3
10,505	-		GFF6878	0.13	-4.9
10,535	+		GFF6878	0.15	-3.3
10,535	+		GFF6878	0.15	-1.4
10,536	-		GFF6878	0.15	-1.0
10,536	-		GFF6878	0.15	-2.3
10,536	-		GFF6878	0.15	-0.5
10,557	-		GFF6878	0.16	-1.5
10,596	-		GFF6878	0.19	-2.9
10,659	+		GFF6878	0.23	-3.1
10,660	-		GFF6878	0.23	-4.2
10,684	+		GFF6878	0.24	-1.0
10,750	+		GFF6878	0.28	-1.9
10,750	+		GFF6878	0.28	+1.5
10,750	+		GFF6878	0.28	-1.7
10,750	+		GFF6878	0.28	-2.3
10,751	-		GFF6878	0.28	-1.9
10,757	+		GFF6878	0.29	-1.0
10,757	+		GFF6878	0.29	-1.1
10,757	+		GFF6878	0.29	-2.5
10,758	-		GFF6878	0.29	-2.2
10,758	-		GFF6878	0.29	-2.3
10,758	-		GFF6878	0.29	-0.5
10,758	-		GFF6878	0.29	+0.2
10,758	-		GFF6878	0.29	-2.4
10,758	-		GFF6878	0.29	-2.4
10,758	-		GFF6878	0.29	-1.7
10,758	-		GFF6878	0.29	-3.5
10,758	-		GFF6878	0.29	-3.1
10,797	+		GFF6878	0.31	-1.8
10,797	+		GFF6878	0.31	-0.5
10,797	+		GFF6878	0.31	-0.5
10,797	+		GFF6878	0.31	-2.6
10,797	+		GFF6878	0.31	-0.8
10,797	+		GFF6878	0.31	-0.7
10,797	+		GFF6878	0.31	-2.4
10,797	+		GFF6878	0.31	-0.9
10,797	+		GFF6878	0.31	-3.3
10,797	+		GFF6878	0.31	-2.4
10,797	+		GFF6878	0.31	-3.3
10,797	+		GFF6878	0.31	-2.6
10,797	+		GFF6878	0.31	-1.9
10,797	+		GFF6878	0.31	-1.7
10,797	+		GFF6878	0.31	-2.3
10,798	-		GFF6878	0.31	-1.4
10,798	-		GFF6878	0.31	-2.2
10,798	-		GFF6878	0.31	-3.1
10,798	-		GFF6878	0.31	-1.4
10,798	-		GFF6878	0.31	-1.3
10,798	-		GFF6878	0.31	-2.5
10,798	-		GFF6878	0.31	+1.4
10,830	+		GFF6878	0.33	-2.5
10,830	+		GFF6878	0.33	-1.4
10,830	+		GFF6878	0.33	-1.2
10,830	+		GFF6878	0.33	-1.3
10,831	-		GFF6878	0.33	-1.8
10,831	-		GFF6878	0.33	-2.8
10,831	-		GFF6878	0.33	-0.6
10,831	-		GFF6878	0.33	-1.8
10,831	-		GFF6878	0.33	-1.5
10,833	+		GFF6878	0.33	-3.2
10,833	+		GFF6878	0.33	-2.5
10,833	+		GFF6878	0.33	-2.1
10,833	+		GFF6878	0.33	-2.5
10,833	+		GFF6878	0.33	-1.4
10,833	+		GFF6878	0.33	-2.7
10,833	+		GFF6878	0.33	-3.3
10,833	+		GFF6878	0.33	-2.3
10,833	+		GFF6878	0.33	-0.8
10,833	+		GFF6878	0.33	-1.4
10,833	+		GFF6878	0.33	-1.0
10,833	+		GFF6878	0.33	-2.9
10,833	+		GFF6878	0.33	-1.2
10,833	+		GFF6878	0.33	-2.4
10,833	+		GFF6878	0.33	-2.1
10,833	+		GFF6878	0.33	-1.7
10,833	+		GFF6878	0.33	-1.2
10,833	+		GFF6878	0.33	-2.8
10,834	-		GFF6878	0.33	-1.2
10,834	-		GFF6878	0.33	-1.8
10,834	-		GFF6878	0.33	-2.0
10,834	-		GFF6878	0.33	-2.3
10,834	-		GFF6878	0.33	-1.7
10,834	-		GFF6878	0.33	-3.1
10,834	-		GFF6878	0.33	-2.7
10,834	-		GFF6878	0.33	-1.1
10,834	-		GFF6878	0.33	-1.7
10,834	-		GFF6878	0.33	-0.0
10,834	-		GFF6878	0.33	-3.4
10,834	-		GFF6878	0.33	-1.9
10,834	-		GFF6878	0.33	-2.4
10,834	-		GFF6878	0.33	+0.8
10,834	-		GFF6878	0.33	-1.4
10,834	-		GFF6878	0.33	-2.4
10,851	+		GFF6878	0.34	+1.8
10,851	+		GFF6878	0.34	-0.5
10,852	-		GFF6878	0.34	+0.8
10,852	-		GFF6878	0.34	-2.5
10,894	+		GFF6878	0.37	-0.8
10,894	+		GFF6878	0.37	-1.2
10,894	+		GFF6878	0.37	-0.5
10,894	+		GFF6878	0.37	-1.0
10,895	-		GFF6878	0.37	-1.4
10,960	+		GFF6878	0.41	-0.8
10,960	+		GFF6878	0.41	-2.2
10,961	-		GFF6878	0.41	-3.7
10,961	-		GFF6878	0.41	-2.4
11,030	-		GFF6878	0.45	-2.7
11,217	+		GFF6878	0.56	-2.0
11,218	-		GFF6878	0.56	-0.2
11,218	-		GFF6878	0.56	-2.6
11,262	+		GFF6878	0.59	-2.0
11,262	+		GFF6878	0.59	-1.4
11,262	+		GFF6878	0.59	-2.0
11,262	+		GFF6878	0.59	-2.5
11,262	+		GFF6878	0.59	-3.5
11,262	+		GFF6878	0.59	-1.5
11,262	+		GFF6878	0.59	-1.2
11,262	+		GFF6878	0.59	-2.7
11,263	-		GFF6878	0.59	-3.1
11,263	-		GFF6878	0.59	-2.1
11,263	-		GFF6878	0.59	+0.8
11,263	-		GFF6878	0.59	-0.8
11,263	-		GFF6878	0.59	-0.8
11,263	-		GFF6878	0.59	-1.5
11,263	-		GFF6878	0.59	-1.2
11,263	-		GFF6878	0.59	-1.4
11,263	-		GFF6878	0.59	-0.2
11,263	-		GFF6878	0.59	-1.7
11,329	+		GFF6878	0.63	-3.1
11,330	-		GFF6878	0.63	-2.2
11,387	+		GFF6878	0.67	-2.1
11,387	+		GFF6878	0.67	-0.8
11,388	-		GFF6878	0.67	-2.7
11,439	+		GFF6878	0.70	-1.8
11,439	+		GFF6878	0.70	-1.2
11,440	-		GFF6878	0.70	-1.0
11,440	-		GFF6878	0.70	-1.7
11,560	-		GFF6878	0.77	-3.0
11,560	-		GFF6878	0.77	-2.2
11,571	+		GFF6878	0.78	-1.9
11,572	-		GFF6878	0.78	-2.7
11,621	+		GFF6878	0.81	-1.8
11,622	-		GFF6878	0.81	-0.5
11,622	-		GFF6878	0.81	-3.2
11,632	-		GFF6878	0.82	-1.6
11,685	+		GFF6878	0.85	-0.8
11,685	+		GFF6878	0.85	-1.4
11,685	+		GFF6878	0.85	-2.4
11,685	+		GFF6878	0.85	-0.5
11,685	+		GFF6878	0.85	-1.8
11,685	+		GFF6878	0.85	-0.5
11,685	+		GFF6878	0.85	-2.7
11,686	-		GFF6878	0.85	-1.3
11,686	-		GFF6878	0.85	-0.2
11,699	+		GFF6878	0.86	-1.2
11,742	+		GFF6878	0.88	-0.2
11,742	+		GFF6878	0.88	-2.4
11,742	+		GFF6878	0.88	-3.6
11,743	-		GFF6878	0.88	-1.5
11,743	-		GFF6878	0.88	-1.8
11,743	-		GFF6878	0.88	-1.0
11,743	-		GFF6878	0.88	-1.2
11,744	-		GFF6878	0.88	+0.5
11,793	+				-1.0
11,793	+				+0.8
11,794	-				-1.8
11,794	-				-0.5
11,874	+				-0.5
11,874	+				-1.9
11,874	+				-2.9
11,874	+				-0.7
11,874	+				-0.1
11,874	+				-1.7
11,874	+				-2.5
11,875	-				+0.5
11,875	-				-3.1
11,908	+				-1.0
11,908	+				-2.0
11,908	+				-1.0
11,908	+				-2.0
11,908	+				-0.8
11,908	+				-2.8
11,908	+				-0.5
11,908	+				-0.5
11,908	+				-1.5
11,908	+				-1.6
11,908	+				-0.5
11,908	+				-0.8
11,908	+				-1.2
11,909	-				-1.2
11,909	-				-1.7
11,909	-				-1.3
11,909	-				-1.2
11,909	-				-1.4
11,909	-				-0.2
11,909	-				-0.5
11,909	-				-0.1
12,095	+				-0.4
12,095	+				+0.3
12,095	+				-0.5
12,095	+				-0.7
12,095	+				-0.3
12,095	+				-0.8
12,095	+				-0.1
12,096	-				-0.3
12,096	-				+0.7
12,096	-				-1.4
12,096	-				-1.0
12,096	-				+0.3
12,096	-				+0.0
12,096	-				-0.6
12,096	-				+0.0
12,676	+				-0.3
12,676	+				-2.2
12,677	-				-1.2
12,677	-				-2.3
12,677	-				-2.4
12,677	-				+1.8