Strain Fitness in Variovorax sp. SCN45 around GFF6772

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
17,056	+		GFF6771	0.24	-0.1
17,056	+		GFF6771	0.24	-1.1
17,056	+		GFF6771	0.24	-1.1
17,056	+		GFF6771	0.24	+1.1
17,057	-		GFF6771	0.24	-2.3
17,057	-		GFF6771	0.24	-0.8
17,057	-		GFF6771	0.24	-0.3
17,057	-		GFF6771	0.24	+1.5
17,057	-		GFF6771	0.24	+0.0
17,057	-		GFF6771	0.24	-0.2
17,239	+		GFF6771	0.44	-0.2
17,239	+		GFF6771	0.44	-0.2
17,239	+		GFF6771	0.44	-1.5
17,240	-		GFF6771	0.44	+0.4
17,240	-		GFF6771	0.44	+1.5
17,257	+		GFF6771	0.46	+0.4
17,257	+		GFF6771	0.46	-1.1
17,257	+		GFF6771	0.46	+1.1
17,257	+		GFF6771	0.46	-1.1
17,258	-		GFF6771	0.46	-1.1
17,258	-		GFF6771	0.46	-0.7
17,258	-		GFF6771	0.46	+0.0
17,258	-		GFF6771	0.46	-0.5
17,736	+				-0.1
17,752	+				-1.2
17,752	+				+0.5
17,752	+				-0.4
17,752	+				-1.3
17,753	-				-0.4
17,753	-				-1.5
17,753	-				+1.3
17,753	-				-0.2
17,842	+				-0.8
17,842	+				-0.2
17,843	-				-0.1
17,855	-				-0.7
18,040	+		GFF6772	0.17	+0.4
18,041	-		GFF6772	0.17	-0.8
18,400	+		GFF6772	0.37	-1.3
18,400	+		GFF6772	0.37	-1.6
18,512	-		GFF6772	0.44	-0.1
18,532	+		GFF6772	0.45	-0.2
18,532	+		GFF6772	0.45	-0.7
18,533	-		GFF6772	0.45	+0.2
18,533	-		GFF6772	0.45	-2.1
19,184	-		GFF6772	0.82	-0.5
19,261	+		GFF6772	0.87	-1.1
19,405	+				-1.1
19,405	+				+0.8
19,406	-				-1.4
19,406	-				-0.1
19,406	-				-0.4
19,502	+				-1.2
19,502	+				+0.5
19,503	-				+0.1
19,503	-				+0.6
19,503	-				-0.9
19,566	+				-1.0
19,566	+				-1.1
19,566	+				-0.1
19,566	+				-2.2
19,567	-				-1.8
19,701	+				-0.5
19,702	-				+0.6
20,022	+		GFF6773	0.52	-0.1
20,061	+		GFF6773	0.57	-0.3
20,061	+		GFF6773	0.57	-0.5
20,269	+		GFF6773	0.85	-0.8
20,269	+		GFF6773	0.85	-0.1
20,270	-		GFF6773	0.85	-0.6
20,270	-		GFF6773	0.85	-1.0
20,270	-		GFF6773	0.85	-0.3
20,270	-		GFF6773	0.85	-0.8
20,380	-				+0.5
20,380	-				+0.2