Strain Fitness in Variovorax sp. SCN45 around GFF6715

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
22,666	+		GFF6714	0.28	-0.4
22,822	-		GFF6714	0.40	-0.5
22,822	-		GFF6714	0.40	+1.3
22,822	-		GFF6714	0.40	-0.5
22,952	+		GFF6714	0.49	-0.8
22,952	+		GFF6714	0.49	+0.1
22,952	+		GFF6714	0.49	+0.0
22,998	-		GFF6714	0.53	-0.8
22,998	-		GFF6714	0.53	-1.7
23,177	+		GFF6714	0.67	-0.0
23,177	+		GFF6714	0.67	-0.8
23,177	+		GFF6714	0.67	+2.1
23,178	-		GFF6714	0.67	-1.9
23,178	-		GFF6714	0.67	+0.6
23,178	-		GFF6714	0.67	-0.7
23,457	-		GFF6714	0.88	-2.1
23,663	-				-1.1
24,034	-		GFF6715	0.45	-0.1
24,123	+		GFF6715	0.55	-0.2
24,123	+		GFF6715	0.55	+0.6
24,123	+		GFF6715	0.55	+0.1
24,124	-		GFF6715	0.55	+1.4
24,354	+		GFF6715	0.81	-0.4
24,354	+		GFF6715	0.81	-1.8
24,382	+		GFF6715	0.84	-0.5
24,382	+		GFF6715	0.84	-0.5
25,117	+		GFF6716	0.40	+0.4
25,118	-		GFF6716	0.40	-2.2
25,118	-		GFF6716	0.40	+1.2
25,192	+		GFF6716	0.45	+0.4
25,390	+		GFF6716	0.59	-0.7
25,390	+		GFF6716	0.59	+0.5
25,391	-		GFF6716	0.59	-1.0
25,391	-		GFF6716	0.59	+0.9
25,391	-		GFF6716	0.59	-0.1
25,391	-		GFF6716	0.59	+0.1
25,396	+		GFF6716	0.59	+0.6