Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6387 and GFF6388 are separated by 20 nucleotides GFF6388 and GFF6389 overlap by 46 nucleotides GFF6389 and GFF6390 are separated by 9 nucleotides GFF6390 and GFF6391 overlap by 4 nucleotides
GFF6387 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2) @ Flavodoxin--NADP(+) reductase (EC 1.19.1.1), at 60,163 to 60,936
GFF6387
GFF6388 - Transcriptional regulator, AcrR family, at 60,957 to 61,712
GFF6388
GFF6389 - Amidohydrolase domain protein, at 61,667 to 62,866
GFF6389
GFF6390 - GtrA-like protein, at 62,876 to 63,277
GFF6390
GFF6391 - RfbJ protein, at 63,274 to 64,242
GFF6391
Position (kb) 61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 60.934 kb on + strand at 60.934 kb on + strand at 60.934 kb on + strand at 60.934 kb on + strand at 60.935 kb on - strand at 61.077 kb on + strand, within GFF6388 at 61.078 kb on - strand, within GFF6388 at 61.078 kb on - strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.146 kb on + strand, within GFF6388 at 61.146 kb on + strand, within GFF6388 at 61.146 kb on + strand, within GFF6388 at 61.146 kb on + strand, within GFF6388 at 61.149 kb on + strand, within GFF6388 at 61.149 kb on + strand, within GFF6388 at 61.197 kb on + strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.290 kb on + strand, within GFF6388 at 61.290 kb on + strand, within GFF6388 at 61.291 kb on - strand, within GFF6388 at 61.293 kb on + strand, within GFF6388 at 61.293 kb on + strand, within GFF6388 at 61.476 kb on + strand, within GFF6388 at 61.476 kb on + strand, within GFF6388 at 61.477 kb on - strand, within GFF6388 at 61.477 kb on - strand, within GFF6388 at 61.477 kb on - strand, within GFF6388 at 61.477 kb on - strand, within GFF6388 at 61.501 kb on - strand, within GFF6388 at 61.501 kb on - strand, within GFF6388 at 61.506 kb on + strand, within GFF6388 at 61.506 kb on + strand, within GFF6388 at 61.507 kb on - strand, within GFF6388 at 61.507 kb on - strand, within GFF6388 at 61.507 kb on - strand, within GFF6388 at 61.630 kb on + strand, within GFF6388 at 61.630 kb on + strand, within GFF6388 at 61.630 kb on + strand, within GFF6388 at 61.630 kb on + strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.710 kb on + strand at 61.711 kb on - strand at 62.213 kb on + strand, within GFF6389 at 62.249 kb on + strand, within GFF6389 at 62.250 kb on - strand, within GFF6389 at 62.368 kb on + strand, within GFF6389 at 62.369 kb on - strand, within GFF6389 at 62.369 kb on - strand, within GFF6389 at 62.369 kb on - strand, within GFF6389 at 62.908 kb on - strand at 62.908 kb on - strand at 63.009 kb on + strand, within GFF6390 at 63.009 kb on + strand, within GFF6390 at 63.009 kb on + strand, within GFF6390 at 63.009 kb on + strand, within GFF6390 at 63.009 kb on + strand, within GFF6390 at 63.009 kb on + strand, within GFF6390 at 63.009 kb on + strand, within GFF6390 at 63.009 kb on + strand, within GFF6390 at 63.010 kb on - strand, within GFF6390 at 63.010 kb on - strand, within GFF6390 at 63.010 kb on - strand, within GFF6390 at 63.010 kb on - strand, within GFF6390 at 63.018 kb on + strand, within GFF6390 at 63.018 kb on + strand, within GFF6390 at 63.019 kb on - strand, within GFF6390 at 63.019 kb on - strand, within GFF6390 at 63.055 kb on - strand, within GFF6390 at 63.055 kb on - strand, within GFF6390 at 63.063 kb on + strand, within GFF6390 at 63.063 kb on + strand, within GFF6390 at 63.064 kb on - strand, within GFF6390 at 63.064 kb on - strand, within GFF6390 at 63.111 kb on + strand, within GFF6390 at 63.111 kb on + strand, within GFF6390 at 63.111 kb on + strand, within GFF6390 at 63.112 kb on - strand, within GFF6390 at 63.112 kb on - strand, within GFF6390 at 63.112 kb on - strand, within GFF6390 at 63.175 kb on - strand, within GFF6390 at 63.202 kb on - strand, within GFF6390 at 63.202 kb on - strand, within GFF6390 at 63.202 kb on - strand, within GFF6390 at 63.314 kb on + strand at 63.314 kb on + strand at 63.314 kb on + strand at 63.315 kb on - strand at 63.315 kb on - strand at 63.315 kb on - strand at 63.455 kb on + strand, within GFF6391 at 63.455 kb on + strand, within GFF6391 at 63.455 kb on + strand, within GFF6391 at 63.455 kb on + strand, within GFF6391 at 63.455 kb on + strand, within GFF6391 at 63.455 kb on + strand, within GFF6391 at 63.455 kb on + strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.456 kb on - strand, within GFF6391 at 63.514 kb on + strand, within GFF6391 at 63.591 kb on - strand, within GFF6391 at 63.632 kb on + strand, within GFF6391 at 63.632 kb on + strand, within GFF6391 at 63.633 kb on - strand, within GFF6391 at 63.633 kb on - strand, within GFF6391 at 63.633 kb on - strand, within GFF6391 at 63.633 kb on - strand, within GFF6391 at 63.633 kb on - strand, within GFF6391 at 63.653 kb on + strand, within GFF6391 at 63.653 kb on + strand, within GFF6391 at 63.654 kb on - strand, within GFF6391 at 63.848 kb on + strand, within GFF6391
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 60,934 + -0.1 60,934 + +1.0 60,934 + -0.3 60,934 + -1.7 60,935 - -0.3 61,077 + GFF6388 0.16 +0.1 61,078 - GFF6388 0.16 +0.1 61,078 - GFF6388 0.16 +0.6 61,143 + GFF6388 0.25 +1.0 61,143 + GFF6388 0.25 -1.5 61,143 + GFF6388 0.25 -0.2 61,143 + GFF6388 0.25 -0.7 61,143 + GFF6388 0.25 -0.3 61,144 - GFF6388 0.25 -0.5 61,144 - GFF6388 0.25 +1.1 61,144 - GFF6388 0.25 -0.8 61,144 - GFF6388 0.25 +0.4 61,144 - GFF6388 0.25 -0.2 61,144 - GFF6388 0.25 +0.4 61,144 - GFF6388 0.25 +0.8 61,144 - GFF6388 0.25 +1.0 61,146 + GFF6388 0.25 -1.3 61,146 + GFF6388 0.25 -2.5 61,146 + GFF6388 0.25 -0.0 61,146 + GFF6388 0.25 -0.0 61,149 + GFF6388 0.25 +0.1 61,149 + GFF6388 0.25 +0.0 61,197 + GFF6388 0.32 -0.4 61,198 - GFF6388 0.32 +0.1 61,198 - GFF6388 0.32 +0.5 61,198 - GFF6388 0.32 -0.6 61,198 - GFF6388 0.32 -0.5 61,198 - GFF6388 0.32 -1.3 61,198 - GFF6388 0.32 -1.2 61,290 + GFF6388 0.44 +0.8 61,290 + GFF6388 0.44 +0.2 61,291 - GFF6388 0.44 -1.3 61,293 + GFF6388 0.44 -2.3 61,293 + GFF6388 0.44 -0.6 61,476 + GFF6388 0.69 -0.6 61,476 + GFF6388 0.69 +0.0 61,477 - GFF6388 0.69 -1.2 61,477 - GFF6388 0.69 -0.7 61,477 - GFF6388 0.69 -1.2 61,477 - GFF6388 0.69 -2.1 61,501 - GFF6388 0.72 -0.1 61,501 - GFF6388 0.72 +1.8 61,506 + GFF6388 0.73 -1.5 61,506 + GFF6388 0.73 +0.5 61,507 - GFF6388 0.73 +0.2 61,507 - GFF6388 0.73 +0.1 61,507 - GFF6388 0.73 -0.2 61,630 + GFF6388 0.89 -0.1 61,630 + GFF6388 0.89 -0.4 61,630 + GFF6388 0.89 +0.0 61,630 + GFF6388 0.89 -1.2 61,631 - GFF6388 0.89 -0.0 61,631 - GFF6388 0.89 -0.8 61,631 - GFF6388 0.89 -0.8 61,631 - GFF6388 0.89 -0.4 61,631 - GFF6388 0.89 +1.5 61,631 - GFF6388 0.89 +1.3 61,710 + +0.4 61,711 - -1.1 62,213 + GFF6389 0.46 -0.3 62,249 + GFF6389 0.48 -1.5 62,250 - GFF6389 0.49 -0.2 62,368 + GFF6389 0.58 -2.1 62,369 - GFF6389 0.58 -0.7 62,369 - GFF6389 0.58 -0.4 62,369 - GFF6389 0.58 +0.5 62,908 - +0.7 62,908 - -0.1 63,009 + GFF6390 0.33 -0.8 63,009 + GFF6390 0.33 +0.1 63,009 + GFF6390 0.33 +0.5 63,009 + GFF6390 0.33 -0.6 63,009 + GFF6390 0.33 -0.3 63,009 + GFF6390 0.33 +0.4 63,009 + GFF6390 0.33 +0.6 63,009 + GFF6390 0.33 -0.2 63,010 - GFF6390 0.33 -0.8 63,010 - GFF6390 0.33 -0.7 63,010 - GFF6390 0.33 +0.2 63,010 - GFF6390 0.33 -0.5 63,018 + GFF6390 0.35 -0.7 63,018 + GFF6390 0.35 -0.5 63,019 - GFF6390 0.36 -0.3 63,019 - GFF6390 0.36 -2.5 63,055 - GFF6390 0.45 +0.9 63,055 - GFF6390 0.45 +0.2 63,063 + GFF6390 0.47 -1.3 63,063 + GFF6390 0.47 -0.6 63,064 - GFF6390 0.47 -0.6 63,064 - GFF6390 0.47 +0.4 63,111 + GFF6390 0.58 -0.7 63,111 + GFF6390 0.58 -1.0 63,111 + GFF6390 0.58 -1.0 63,112 - GFF6390 0.59 -0.7 63,112 - GFF6390 0.59 -0.4 63,112 - GFF6390 0.59 -0.2 63,175 - GFF6390 0.74 +0.8 63,202 - GFF6390 0.81 +0.2 63,202 - GFF6390 0.81 +0.3 63,202 - GFF6390 0.81 -1.0 63,314 + +0.3 63,314 + +0.1 63,314 + +1.1 63,315 - -2.8 63,315 - -0.8 63,315 - +0.0 63,455 + GFF6391 0.19 +0.5 63,455 + GFF6391 0.19 -0.5 63,455 + GFF6391 0.19 -0.3 63,455 + GFF6391 0.19 -0.7 63,455 + GFF6391 0.19 -0.9 63,455 + GFF6391 0.19 -1.3 63,455 + GFF6391 0.19 +1.3 63,456 - GFF6391 0.19 -1.1 63,456 - GFF6391 0.19 +1.8 63,456 - GFF6391 0.19 -2.7 63,456 - GFF6391 0.19 -2.5 63,456 - GFF6391 0.19 -0.0 63,456 - GFF6391 0.19 -0.5 63,456 - GFF6391 0.19 +1.2 63,456 - GFF6391 0.19 +0.1 63,456 - GFF6391 0.19 -0.5 63,456 - GFF6391 0.19 -0.6 63,514 + GFF6391 0.25 +0.6 63,591 - GFF6391 0.33 -0.2 63,632 + GFF6391 0.37 -0.3 63,632 + GFF6391 0.37 -0.5 63,633 - GFF6391 0.37 +1.1 63,633 - GFF6391 0.37 +0.2 63,633 - GFF6391 0.37 -0.8 63,633 - GFF6391 0.37 -0.3 63,633 - GFF6391 0.37 +0.2 63,653 + GFF6391 0.39 -2.0 63,653 + GFF6391 0.39 -1.8 63,654 - GFF6391 0.39 +0.6 63,848 + GFF6391 0.59 -0.2
Or see this region's nucleotide sequence