Strain Fitness in Variovorax sp. SCN45 around GFF6256

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
49,075	+		GFF6255	0.21	-0.3
49,075	+		GFF6255	0.21	+0.5
49,327	+		GFF6255	0.43	-0.3
49,361	-		GFF6255	0.46	-0.4
49,407	-		GFF6255	0.50	+0.5
49,435	+		GFF6255	0.52	-0.7
49,436	-		GFF6255	0.52	-0.5
49,438	+		GFF6255	0.52	-0.4
49,438	+		GFF6255	0.52	-1.9
49,438	+		GFF6255	0.52	+0.8
49,438	+		GFF6255	0.52	+0.7
49,438	+		GFF6255	0.52	+1.1
49,438	+		GFF6255	0.52	+0.5
49,438	+		GFF6255	0.52	+0.2
49,439	-		GFF6255	0.52	+1.0
49,439	-		GFF6255	0.52	+0.2
49,439	-		GFF6255	0.52	+0.0
49,439	-		GFF6255	0.52	-0.3
49,439	-		GFF6255	0.52	-0.4
49,447	-		GFF6255	0.53	-1.2
49,462	+		GFF6255	0.54	+0.1
50,451	-		GFF6256	0.65	+0.0
50,451	-		GFF6256	0.65	-0.3
50,514	+		GFF6256	0.74	+0.1
50,515	-		GFF6256	0.74	+1.2
50,523	+		GFF6256	0.75	+0.2
50,523	+		GFF6256	0.75	+0.3
50,523	+		GFF6256	0.75	+0.5
50,625	-		GFF6256	0.90	-0.0
50,732	+				+0.1
50,732	+				+1.4
50,732	+				+0.1
50,733	-				-0.3
51,426	-				+0.3
51,697	+		GFF6258	0.25	-0.2
51,698	-		GFF6258	0.25	-0.1