Strain Fitness in Variovorax sp. SCN45 around GFF6119

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
18,909	+		GFF6118	0.44	+0.7
18,909	+		GFF6118	0.44	-0.8
18,931	-		GFF6118	0.47	+0.2
19,050	+		GFF6118	0.63	+0.6
19,050	+		GFF6118	0.63	-0.6
19,050	+		GFF6118	0.63	-0.8
19,051	-		GFF6118	0.64	-0.4
19,125	+		GFF6118	0.74	+0.8
19,152	+		GFF6118	0.77	-2.0
19,152	+		GFF6118	0.77	-0.8
19,153	-		GFF6118	0.78	-0.9
19,374	+				-1.5
19,801	+		GFF6119	0.30	-0.8
19,801	+		GFF6119	0.30	-0.4
19,802	-		GFF6119	0.31	-1.0
19,802	-		GFF6119	0.31	-0.0
19,802	-		GFF6119	0.31	-0.8
19,825	+		GFF6119	0.32	-0.6
19,825	+		GFF6119	0.32	+0.2
19,825	+		GFF6119	0.32	-0.3
19,826	-		GFF6119	0.32	+0.6
19,826	-		GFF6119	0.32	+1.6
20,159	-		GFF6119	0.59	+0.7
20,170	+		GFF6119	0.60	-0.8
20,170	+		GFF6119	0.60	-0.9
20,171	-		GFF6119	0.60	-0.8
20,468	-		GFF6119	0.83	-0.2
20,609	-				+0.6
20,642	-				+0.9
20,642	-				-0.8
20,718	-				+0.3
20,718	-				+0.6