Strain Fitness in Variovorax sp. SCN45 around GFF5954

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
9,074	+		GFF5953	0.31	+0.0
9,227	+		GFF5953	0.48	-0.5
9,228	-		GFF5953	0.49	+0.6
9,290	+		GFF5953	0.56	-1.2
9,494	+		GFF5953	0.79	+0.7
9,494	+		GFF5953	0.79	-1.2
9,494	+		GFF5953	0.79	-0.2
9,497	+		GFF5953	0.80	+0.2
9,497	+		GFF5953	0.80	+0.6
9,497	+		GFF5953	0.80	-1.1
9,497	+		GFF5953	0.80	+1.7
9,497	+		GFF5953	0.80	-1.2
9,498	-		GFF5953	0.80	+0.2
9,942	+		GFF5954	0.24	-0.9
9,943	-		GFF5954	0.24	-0.7
10,231	+		GFF5954	0.50	+0.2
10,564	+		GFF5954	0.79	+0.3
10,565	-		GFF5954	0.79	+0.0
10,565	-		GFF5954	0.79	-0.1
10,565	-		GFF5954	0.79	-0.5
10,577	-		GFF5954	0.80	-1.6
10,616	-		GFF5954	0.84	+0.1
10,616	-		GFF5954	0.84	-0.3
10,794	+				-0.3
10,795	+				+0.6
10,795	+				+0.7
10,795	+				+0.3
10,795	+				-0.5
10,795	+				-0.2
10,796	-				-3.7
10,796	-				-2.4
10,861	+				-1.1
10,862	-				-1.5
10,862	-				+0.8
10,862	-				-0.6
10,862	-				-0.1
10,862	-				-1.0
11,054	+		GFF5955	0.22	+0.5
11,055	-		GFF5955	0.22	-0.3
11,576	+		GFF5955	0.78	-1.8
11,576	+		GFF5955	0.78	+0.8
11,576	+		GFF5955	0.78	-0.4
11,577	-		GFF5955	0.79	+1.4
11,582	+		GFF5955	0.79	-0.3
11,582	+		GFF5955	0.79	+0.5
11,582	+		GFF5955	0.79	-1.0
11,583	-		GFF5955	0.79	-0.0
11,583	-		GFF5955	0.79	+0.9
11,583	-		GFF5955	0.79	-0.6
11,583	-		GFF5955	0.79	-0.1