Strain Fitness in Variovorax sp. SCN45 around GFF5941

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
160,957	+		GFF5940	0.40	-0.5
160,958	-		GFF5940	0.40	-1.4
160,960	+		GFF5940	0.40	-0.8
160,960	+		GFF5940	0.40	-0.6
160,960	+		GFF5940	0.40	-0.3
160,961	-		GFF5940	0.40	-0.3
161,239	+		GFF5940	0.74	+0.5
161,240	-		GFF5940	0.74	-0.5
161,240	-		GFF5940	0.74	-0.6
161,567	+		GFF5941	0.15	-1.6
161,988	-				-0.2
162,255	+				+0.2
162,255	+				+0.5
162,609	+		GFF5942	0.24	+1.6
162,609	+		GFF5942	0.24	-0.5
162,609	+		GFF5942	0.24	+0.3
162,610	-		GFF5942	0.24	+0.0
162,610	-		GFF5942	0.24	-0.2
162,814	-		GFF5942	0.34	-0.3
162,814	-		GFF5942	0.34	-1.3