Strain Fitness in Variovorax sp. SCN45 around GFF5866

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5864 and GFF5865 overlap by 4 nucleotidesGFF5865 and GFF5866 are separated by 44 nucleotidesGFF5866 and GFF5867 are separated by 10 nucleotidesGFF5867 and GFF5868 are separated by 14 nucleotides GFF5864 - no description, at 67,761 to 68,402 GFF5864 GFF5865 - Probable iron export permease protein FetB, at 68,399 to 69,193 GFF5865 GFF5866 - Aspartate racemase (EC 5.1.1.13), at 69,238 to 69,942 GFF5866 GFF5867 - no description, at 69,953 to 70,255 GFF5867 GFF5868 - hypothetical protein, at 70,270 to 74,553 GFF5868 Position (kb) 69 70Strain fitness (log2 ratio) -2 -1 0 1 2 3at 68.660 kb on + strand, within GFF5865at 68.712 kb on + strand, within GFF5865at 68.712 kb on + strand, within GFF5865at 68.712 kb on + strand, within GFF5865at 68.712 kb on + strand, within GFF5865at 68.713 kb on - strand, within GFF5865at 68.713 kb on - strand, within GFF5865at 68.713 kb on - strand, within GFF5865at 68.713 kb on - strand, within GFF5865at 68.771 kb on + strand, within GFF5865at 68.771 kb on + strand, within GFF5865at 68.771 kb on + strand, within GFF5865at 68.771 kb on + strand, within GFF5865at 68.772 kb on - strand, within GFF5865at 69.068 kb on + strand, within GFF5865at 69.068 kb on + strand, within GFF5865at 69.068 kb on + strand, within GFF5865at 69.069 kb on - strand, within GFF5865at 69.069 kb on - strand, within GFF5865at 69.069 kb on - strand, within GFF5865at 69.069 kb on - strand, within GFF5865at 69.131 kb on + strandat 69.132 kb on - strandat 69.132 kb on - strandat 69.226 kb on + strandat 69.331 kb on + strand, within GFF5866at 69.391 kb on + strand, within GFF5866at 69.391 kb on + strand, within GFF5866at 69.391 kb on + strand, within GFF5866at 69.391 kb on + strand, within GFF5866at 69.392 kb on - strand, within GFF5866at 69.392 kb on - strand, within GFF5866at 69.392 kb on - strand, within GFF5866at 69.392 kb on - strand, within GFF5866at 69.392 kb on - strand, within GFF5866at 69.392 kb on - strand, within GFF5866at 69.392 kb on - strand, within GFF5866at 69.649 kb on + strand, within GFF5866at 70.029 kb on + strand, within GFF5867at 70.030 kb on - strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.074 kb on + strand, within GFF5867at 70.075 kb on - strand, within GFF5867at 70.075 kb on - strand, within GFF5867at 70.075 kb on - strand, within GFF5867at 70.075 kb on - strand, within GFF5867at 70.075 kb on - strand, within GFF5867at 70.075 kb on - strand, within GFF5867at 70.075 kb on - strand, within GFF5867at 70.149 kb on + strand, within GFF5867at 70.149 kb on + strand, within GFF5867at 70.150 kb on - strand, within GFF5867at 70.150 kb on - strand, within GFF5867at 70.150 kb on - strand, within GFF5867at 70.150 kb on - strand, within GFF5867at 70.313 kb on + strandat 70.314 kb on - strandat 70.340 kb on + strandat 70.341 kb on - strandat 70.355 kb on + strandat 70.355 kb on + strandat 70.355 kb on + strandat 70.355 kb on + strandat 70.356 kb on - strandat 70.356 kb on - strandat 70.391 kb on + strandat 70.391 kb on + strandat 70.391 kb on + strandat 70.391 kb on + strandat 70.391 kb on + strandat 70.391 kb on + strandat 70.391 kb on + strandat 70.391 kb on + strandat 70.391 kb on + strandat 70.392 kb on - strandat 70.392 kb on - strandat 70.392 kb on - strandat 70.392 kb on - strandat 70.392 kb on - strandat 70.392 kb on - strandat 70.392 kb on - strandat 70.394 kb on + strandat 70.394 kb on + strandat 70.394 kb on + strandat 70.394 kb on + strandat 70.394 kb on + strandat 70.394 kb on + strandat 70.395 kb on - strandat 70.395 kb on - strandat 70.395 kb on - strandat 70.395 kb on - strandat 70.395 kb on - strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.583 kb on + strandat 70.584 kb on - strandat 70.584 kb on - strandat 70.584 kb on - strandat 70.584 kb on - strandat 70.584 kb on - strandat 70.584 kb on - strandat 70.584 kb on - strandat 70.584 kb on - strandat 70.658 kb on + strandat 70.659 kb on - strandat 70.659 kb on - strandat 70.659 kb on - strandat 70.739 kb on + strand, within GFF5868at 70.739 kb on + strand, within GFF5868at 70.739 kb on + strand, within GFF5868at 70.739 kb on + strand, within GFF5868at 70.739 kb on + strand, within GFF5868at 70.739 kb on + strand, within GFF5868at 70.740 kb on - strand, within GFF5868at 70.740 kb on - strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.745 kb on + strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.746 kb on - strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.751 kb on + strand, within GFF5868at 70.752 kb on - strand, within GFF5868at 70.752 kb on - strand, within GFF5868at 70.752 kb on - strand, within GFF5868at 70.752 kb on - strand, within GFF5868at 70.752 kb on - strand, within GFF5868at 70.752 kb on - strand, within GFF5868at 70.752 kb on - strand, within GFF5868at 70.799 kb on + strand, within GFF5868at 70.799 kb on + strand, within GFF5868at 70.820 kb on + strand, within GFF5868at 70.820 kb on + strand, within GFF5868at 70.820 kb on + strand, within GFF5868at 70.820 kb on + strand, within GFF5868at 70.821 kb on - strand, within GFF5868at 70.821 kb on - strand, within GFF5868at 70.821 kb on - strand, within GFF5868at 70.821 kb on - strand, within GFF5868at 70.821 kb on - strand, within GFF5868at 70.821 kb on - strand, within GFF5868at 70.821 kb on - strand, within GFF5868at 70.821 kb on - strand, within GFF5868

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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68,660 + GFF5865 0.33 -1.2
68,712 + GFF5865 0.39 -0.7
68,712 + GFF5865 0.39 -0.2
68,712 + GFF5865 0.39 -0.5
68,712 + GFF5865 0.39 -0.2
68,713 - GFF5865 0.39 +0.3
68,713 - GFF5865 0.39 -0.1
68,713 - GFF5865 0.39 -0.8
68,713 - GFF5865 0.39 -1.0
68,771 + GFF5865 0.47 +0.3
68,771 + GFF5865 0.47 -0.8
68,771 + GFF5865 0.47 -0.0
68,771 + GFF5865 0.47 +0.6
68,772 - GFF5865 0.47 +0.0
69,068 + GFF5865 0.84 +0.7
69,068 + GFF5865 0.84 -0.3
69,068 + GFF5865 0.84 +0.0
69,069 - GFF5865 0.84 -0.4
69,069 - GFF5865 0.84 -0.8
69,069 - GFF5865 0.84 -0.0
69,069 - GFF5865 0.84 -0.3
69,131 + -0.1
69,132 - +0.3
69,132 - +1.5
69,226 + -0.2
69,331 + GFF5866 0.13 -0.0
69,391 + GFF5866 0.22 +1.2
69,391 + GFF5866 0.22 +1.0
69,391 + GFF5866 0.22 +0.7
69,391 + GFF5866 0.22 +1.8
69,392 - GFF5866 0.22 +0.2
69,392 - GFF5866 0.22 -0.5
69,392 - GFF5866 0.22 -2.3
69,392 - GFF5866 0.22 -0.8
69,392 - GFF5866 0.22 +0.4
69,392 - GFF5866 0.22 -0.6
69,392 - GFF5866 0.22 -0.9
69,649 + GFF5866 0.58 +0.2
70,029 + GFF5867 0.25 +0.8
70,030 - GFF5867 0.25 +0.5
70,074 + GFF5867 0.40 +0.1
70,074 + GFF5867 0.40 +0.6
70,074 + GFF5867 0.40 +0.6
70,074 + GFF5867 0.40 -0.1
70,074 + GFF5867 0.40 +3.4
70,074 + GFF5867 0.40 -0.5
70,074 + GFF5867 0.40 -0.4
70,074 + GFF5867 0.40 +0.2
70,074 + GFF5867 0.40 -0.2
70,074 + GFF5867 0.40 -1.1
70,074 + GFF5867 0.40 +0.8
70,074 + GFF5867 0.40 -0.2
70,074 + GFF5867 0.40 -1.4
70,074 + GFF5867 0.40 -0.8
70,075 - GFF5867 0.40 +0.4
70,075 - GFF5867 0.40 -0.5
70,075 - GFF5867 0.40 -0.8
70,075 - GFF5867 0.40 +0.0
70,075 - GFF5867 0.40 -0.2
70,075 - GFF5867 0.40 -0.3
70,075 - GFF5867 0.40 -0.8
70,149 + GFF5867 0.65 -0.1
70,149 + GFF5867 0.65 +0.3
70,150 - GFF5867 0.65 +0.8
70,150 - GFF5867 0.65 -0.7
70,150 - GFF5867 0.65 +1.2
70,150 - GFF5867 0.65 -0.3
70,313 + -0.0
70,314 - -2.5
70,340 + +0.1
70,341 - +0.7
70,355 + -0.4
70,355 + -0.8
70,355 + +2.0
70,355 + -0.4
70,356 - -0.4
70,356 - -0.4
70,391 + +0.3
70,391 + +1.2
70,391 + +0.4
70,391 + +0.5
70,391 + -0.1
70,391 + -0.9
70,391 + -0.8
70,391 + -0.4
70,391 + +0.4
70,392 - +0.3
70,392 - -0.2
70,392 - +0.2
70,392 - +0.0
70,392 - -1.8
70,392 - -0.3
70,392 - -0.5
70,394 + -0.0
70,394 + -0.8
70,394 + +0.8
70,394 + +0.5
70,394 + -0.4
70,394 + -1.0
70,395 - +0.8
70,395 - +0.3
70,395 - +1.8
70,395 - +0.3
70,395 - +0.6
70,583 + -0.5
70,583 + -0.4
70,583 + -0.0
70,583 + -1.4
70,583 + -0.0
70,583 + +0.5
70,583 + +0.1
70,583 + +0.1
70,583 + -0.8
70,583 + -1.0
70,583 + -0.2
70,583 + +0.3
70,584 - -0.0
70,584 - -1.2
70,584 - +0.8
70,584 - +0.5
70,584 - +0.2
70,584 - -0.7
70,584 - -1.3
70,584 - -0.1
70,658 + +0.2
70,659 - -1.6
70,659 - +0.1
70,659 - -1.4
70,739 + GFF5868 0.11 +0.1
70,739 + GFF5868 0.11 -0.2
70,739 + GFF5868 0.11 +1.0
70,739 + GFF5868 0.11 -0.8
70,739 + GFF5868 0.11 -0.3
70,739 + GFF5868 0.11 -0.4
70,740 - GFF5868 0.11 +1.0
70,740 - GFF5868 0.11 +1.6
70,745 + GFF5868 0.11 +0.3
70,745 + GFF5868 0.11 -0.1
70,745 + GFF5868 0.11 +0.3
70,745 + GFF5868 0.11 -0.5
70,745 + GFF5868 0.11 -0.2
70,745 + GFF5868 0.11 +0.5
70,745 + GFF5868 0.11 -0.5
70,745 + GFF5868 0.11 -0.6
70,745 + GFF5868 0.11 -0.5
70,745 + GFF5868 0.11 -0.8
70,745 + GFF5868 0.11 +0.2
70,745 + GFF5868 0.11 -0.6
70,745 + GFF5868 0.11 -1.1
70,745 + GFF5868 0.11 +0.3
70,745 + GFF5868 0.11 -0.2
70,745 + GFF5868 0.11 -1.0
70,745 + GFF5868 0.11 -0.8
70,746 - GFF5868 0.11 -1.1
70,746 - GFF5868 0.11 +1.8
70,746 - GFF5868 0.11 -0.1
70,746 - GFF5868 0.11 +0.6
70,746 - GFF5868 0.11 -0.2
70,746 - GFF5868 0.11 -0.6
70,746 - GFF5868 0.11 -1.5
70,746 - GFF5868 0.11 -0.1
70,746 - GFF5868 0.11 -0.0
70,746 - GFF5868 0.11 -1.2
70,746 - GFF5868 0.11 +0.0
70,746 - GFF5868 0.11 +0.6
70,746 - GFF5868 0.11 -1.0
70,746 - GFF5868 0.11 +0.1
70,751 + GFF5868 0.11 -0.3
70,751 + GFF5868 0.11 -0.1
70,751 + GFF5868 0.11 +0.5
70,751 + GFF5868 0.11 +0.8
70,751 + GFF5868 0.11 +0.0
70,751 + GFF5868 0.11 -1.4
70,751 + GFF5868 0.11 -0.3
70,751 + GFF5868 0.11 -0.3
70,751 + GFF5868 0.11 -1.4
70,751 + GFF5868 0.11 +1.8
70,751 + GFF5868 0.11 +0.4
70,751 + GFF5868 0.11 -0.1
70,751 + GFF5868 0.11 -0.2
70,751 + GFF5868 0.11 -0.5
70,752 - GFF5868 0.11 -0.1
70,752 - GFF5868 0.11 -0.4
70,752 - GFF5868 0.11 -0.7
70,752 - GFF5868 0.11 +0.1
70,752 - GFF5868 0.11 -0.5
70,752 - GFF5868 0.11 -0.2
70,752 - GFF5868 0.11 +0.5
70,799 + GFF5868 0.12 -0.4
70,799 + GFF5868 0.12 +1.5
70,820 + GFF5868 0.13 +1.5
70,820 + GFF5868 0.13 -0.3
70,820 + GFF5868 0.13 +1.8
70,820 + GFF5868 0.13 -0.2
70,821 - GFF5868 0.13 -0.4
70,821 - GFF5868 0.13 -0.9
70,821 - GFF5868 0.13 +0.2
70,821 - GFF5868 0.13 -0.2
70,821 - GFF5868 0.13 -0.4
70,821 - GFF5868 0.13 -0.3
70,821 - GFF5868 0.13 +0.0
70,821 - GFF5868 0.13 -0.8

Or see this region's nucleotide sequence