Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5601 and GFF5602 are separated by 132 nucleotides GFF5602 and GFF5603 are separated by 186 nucleotides GFF5603 and GFF5604 are separated by 116 nucleotides
GFF5601 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 220,234 to 220,920
GFF5601
GFF5602 - FIG00348944: hypothetical protein, at 221,053 to 221,559
GFF5602
GFF5603 - D-xylose ABC transporter, substrate-binding protein XylF, at 221,746 to 222,768
GFF5603
GFF5604 - D-xylose ABC transporter, permease protein XylH, at 222,885 to 224,075
GFF5604
Position (kb) 221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.170 kb on + strand, within GFF5602 at 221.171 kb on - strand, within GFF5602 at 221.222 kb on + strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.288 kb on - strand, within GFF5602 at 221.431 kb on + strand, within GFF5602 at 221.671 kb on + strand at 221.689 kb on - strand at 221.692 kb on + strand at 221.700 kb on + strand at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.296 kb on - strand, within GFF5603 at 222.296 kb on - strand, within GFF5603 at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 223.023 kb on + strand, within GFF5604 at 223.023 kb on + strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.228 kb on - strand, within GFF5604 at 223.572 kb on + strand, within GFF5604 at 223.572 kb on + strand, within GFF5604 at 223.573 kb on - strand, within GFF5604 at 223.573 kb on - strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 221,059 + -1.4 221,059 + -0.5 221,059 + +1.2 221,059 + -0.6 221,059 + +2.4 221,059 + -1.0 221,059 + +0.2 221,060 - -1.9 221,060 - -0.5 221,060 - -1.1 221,060 - -0.8 221,060 - +0.3 221,060 - -0.2 221,060 - -1.0 221,170 + GFF5602 0.23 -0.3 221,171 - GFF5602 0.23 -0.4 221,222 + GFF5602 0.33 +0.7 221,223 - GFF5602 0.34 +0.5 221,223 - GFF5602 0.34 -0.0 221,223 - GFF5602 0.34 -1.1 221,223 - GFF5602 0.34 +0.9 221,223 - GFF5602 0.34 -1.5 221,223 - GFF5602 0.34 +0.6 221,288 - GFF5602 0.46 -0.9 221,431 + GFF5602 0.75 +0.1 221,671 + -0.5 221,689 - -0.5 221,692 + -0.8 221,700 + -1.2 221,908 + GFF5603 0.16 -2.5 221,908 + GFF5603 0.16 -2.3 221,908 + GFF5603 0.16 -1.4 221,908 + GFF5603 0.16 -2.8 221,908 + GFF5603 0.16 -0.2 221,908 + GFF5603 0.16 -2.0 221,908 + GFF5603 0.16 +1.3 221,909 - GFF5603 0.16 -0.5 221,909 - GFF5603 0.16 -1.0 221,909 - GFF5603 0.16 -1.8 221,909 - GFF5603 0.16 -2.4 222,071 - GFF5603 0.32 -1.8 222,071 - GFF5603 0.32 -1.4 222,071 - GFF5603 0.32 -1.3 222,071 - GFF5603 0.32 -2.2 222,103 + GFF5603 0.35 -3.2 222,103 + GFF5603 0.35 -1.3 222,103 + GFF5603 0.35 -1.7 222,103 + GFF5603 0.35 -1.7 222,103 + GFF5603 0.35 -1.4 222,103 + GFF5603 0.35 -0.5 222,103 + GFF5603 0.35 -1.8 222,103 + GFF5603 0.35 -1.8 222,103 + GFF5603 0.35 -0.5 222,103 + GFF5603 0.35 -2.5 222,103 + GFF5603 0.35 -2.7 222,103 + GFF5603 0.35 -3.5 222,104 - GFF5603 0.35 -0.3 222,104 - GFF5603 0.35 -1.8 222,104 - GFF5603 0.35 -1.1 222,104 - GFF5603 0.35 -2.7 222,104 - GFF5603 0.35 +0.0 222,104 - GFF5603 0.35 -1.4 222,178 + GFF5603 0.42 +0.2 222,178 + GFF5603 0.42 -3.4 222,178 + GFF5603 0.42 -0.7 222,178 + GFF5603 0.42 -1.6 222,178 + GFF5603 0.42 -0.7 222,178 + GFF5603 0.42 +0.0 222,178 + GFF5603 0.42 -1.6 222,178 + GFF5603 0.42 -2.3 222,178 + GFF5603 0.42 -2.0 222,178 + GFF5603 0.42 -0.3 222,178 + GFF5603 0.42 -0.8 222,178 + GFF5603 0.42 +2.9 222,178 + GFF5603 0.42 -0.7 222,179 - GFF5603 0.42 -0.8 222,179 - GFF5603 0.42 -0.4 222,179 - GFF5603 0.42 -0.2 222,179 - GFF5603 0.42 -2.1 222,179 - GFF5603 0.42 -1.3 222,179 - GFF5603 0.42 +0.9 222,179 - GFF5603 0.42 -1.5 222,179 - GFF5603 0.42 -1.3 222,179 - GFF5603 0.42 -1.5 222,295 + GFF5603 0.54 -0.8 222,295 + GFF5603 0.54 -1.1 222,295 + GFF5603 0.54 -2.1 222,296 - GFF5603 0.54 -1.4 222,296 - GFF5603 0.54 -1.6 222,766 + -1.6 222,766 + -0.4 222,766 + +0.2 222,766 + -1.7 222,766 + -2.4 222,766 + +0.3 222,767 - +0.3 222,767 - +1.4 222,767 - -0.9 222,767 - +1.9 222,767 - -2.5 222,767 - -2.1 222,767 - -1.5 223,023 + GFF5604 0.12 -1.1 223,023 + GFF5604 0.12 -0.2 223,024 - GFF5604 0.12 -1.1 223,024 - GFF5604 0.12 -1.8 223,024 - GFF5604 0.12 -2.4 223,158 + GFF5604 0.23 -2.9 223,158 + GFF5604 0.23 +0.3 223,158 + GFF5604 0.23 -1.5 223,158 + GFF5604 0.23 -0.7 223,158 + GFF5604 0.23 -1.0 223,158 + GFF5604 0.23 -3.5 223,158 + GFF5604 0.23 +0.7 223,159 - GFF5604 0.23 -1.7 223,159 - GFF5604 0.23 -3.0 223,159 - GFF5604 0.23 -2.1 223,159 - GFF5604 0.23 -0.3 223,159 - GFF5604 0.23 -1.6 223,159 - GFF5604 0.23 -1.3 223,227 + GFF5604 0.29 -2.4 223,227 + GFF5604 0.29 -1.3 223,227 + GFF5604 0.29 -1.1 223,228 - GFF5604 0.29 -0.8 223,572 + GFF5604 0.58 -2.1 223,572 + GFF5604 0.58 -0.6 223,573 - GFF5604 0.58 -1.8 223,573 - GFF5604 0.58 -1.7 223,683 + GFF5604 0.67 -0.4 223,683 + GFF5604 0.67 +0.9 223,683 + GFF5604 0.67 -0.7 223,683 + GFF5604 0.67 -1.3 223,684 - GFF5604 0.67 -2.0 223,684 - GFF5604 0.67 -1.5 223,684 - GFF5604 0.67 -2.4 223,684 - GFF5604 0.67 +1.4 223,684 - GFF5604 0.67 -1.0
Or see this region's nucleotide sequence