Strain Fitness in Variovorax sp. SCN45 around GFF5475

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
103,777	+		GFF5473	0.75	+0.1
103,778	-		GFF5473	0.75	-0.7
103,778	-		GFF5473	0.75	-0.5
103,919	+		GFF5473	0.81	-0.6
103,919	+		GFF5473	0.81	-0.2
103,960	+		GFF5473	0.82	-0.4
103,961	-		GFF5473	0.82	-1.1
103,961	-		GFF5473	0.82	-0.1
103,961	-		GFF5473	0.82	-0.1
103,961	-		GFF5473	0.82	-0.3
103,961	-		GFF5473	0.82	-0.3
103,961	-		GFF5473	0.82	+0.0
104,015	+		GFF5473	0.84	+0.2
104,015	+		GFF5473	0.84	+0.1
104,015	+		GFF5473	0.84	-0.2
104,015	+		GFF5473	0.84	-0.2
104,016	-		GFF5473	0.84	-0.8
104,016	-		GFF5473	0.84	-0.7
104,016	-		GFF5473	0.84	+0.1
104,016	-		GFF5473	0.84	+0.6
104,016	-		GFF5473	0.84	+0.6
104,210	+				-0.4
104,210	+				+0.0
104,417	+				-0.6
104,417	+				+0.3
104,417	+				-1.1
104,417	+				+2.6
104,418	-				-0.6
104,418	-				-1.1
104,418	-				-0.8
104,418	-				-0.1
104,418	-				-0.6
104,534	+		GFF5474	0.64	-0.3
104,534	+		GFF5474	0.64	+0.0
104,534	+		GFF5474	0.64	-0.4
104,535	-		GFF5474	0.65	+0.6
104,560	+		GFF5474	0.77	-0.9
104,560	+		GFF5474	0.77	-0.1
104,560	+		GFF5474	0.77	-0.7
104,560	+		GFF5474	0.77	+0.7
104,677	+				+0.4
104,677	+				-0.3
104,678	-				+0.1
104,812	+				-1.2
104,812	+				+0.0
104,812	+				+0.7
104,812	+				+0.0
104,812	+				-1.1
104,813	-				-0.6
104,813	-				+0.7
104,814	-				-0.5
105,184	+		GFF5475	0.32	-1.7
105,184	+		GFF5475	0.32	-0.1
105,184	+		GFF5475	0.32	-1.0
105,185	-		GFF5475	0.32	-1.0
105,185	-		GFF5475	0.32	-0.2
106,256	+				-0.8
106,257	-				+0.7
106,294	+				-1.3
106,405	+				+1.0
106,405	+				+0.3
106,405	+				+2.1
106,405	+				-0.1
106,405	+				+0.5
106,405	+				+0.3
106,406	-		GFF5476	0.10	-1.1
106,406	-		GFF5476	0.10	-1.0
106,406	-		GFF5476	0.10	-1.0
106,406	-		GFF5476	0.10	-1.1
106,406	-		GFF5476	0.10	+0.3
106,406	-		GFF5476	0.10	+0.2
106,426	+		GFF5476	0.13	-1.0
106,426	+		GFF5476	0.13	-1.3
106,426	+		GFF5476	0.13	+0.3
106,427	-		GFF5476	0.13	-0.5
106,427	-		GFF5476	0.13	-0.4
106,427	-		GFF5476	0.13	-0.3
106,438	+		GFF5476	0.14	+1.9
106,448	-		GFF5476	0.15	+0.1
106,448	-		GFF5476	0.15	+3.2
106,448	-		GFF5476	0.15	-0.2
106,474	+		GFF5476	0.19	-0.5
106,475	-		GFF5476	0.19	-0.1
106,588	+		GFF5476	0.34	+1.1
106,588	+		GFF5476	0.34	-0.7
106,588	+		GFF5476	0.34	+0.0
106,589	-		GFF5476	0.34	-0.7
106,589	-		GFF5476	0.34	-0.2
106,687	+		GFF5476	0.46	+0.0
106,687	+		GFF5476	0.46	+0.4
106,687	+		GFF5476	0.46	-0.2
106,687	+		GFF5476	0.46	-1.3
106,687	+		GFF5476	0.46	-0.3
106,687	+		GFF5476	0.46	-0.7
106,687	+		GFF5476	0.46	-1.0
106,687	+		GFF5476	0.46	+0.6
106,687	+		GFF5476	0.46	-0.2
106,687	+		GFF5476	0.46	-0.3
106,687	+		GFF5476	0.46	-0.3
106,688	-		GFF5476	0.47	-1.3
106,688	-		GFF5476	0.47	+2.6
106,688	-		GFF5476	0.47	-0.7
106,688	-		GFF5476	0.47	+0.2
106,688	-		GFF5476	0.47	+0.2
106,688	-		GFF5476	0.47	-0.4
106,688	-		GFF5476	0.47	-0.4
106,688	-		GFF5476	0.47	+0.4
106,688	-		GFF5476	0.47	+0.3
106,873	+		GFF5476	0.71	+1.4
106,873	+		GFF5476	0.71	-0.4
106,873	+		GFF5476	0.71	+0.5
106,873	+		GFF5476	0.71	-0.6
106,873	+		GFF5476	0.71	-1.3
106,873	+		GFF5476	0.71	-1.3
106,873	+		GFF5476	0.71	-0.1
106,873	+		GFF5476	0.71	-1.2
106,873	+		GFF5476	0.71	-0.7
106,873	+		GFF5476	0.71	-1.8
106,873	+		GFF5476	0.71	+1.9
106,873	+		GFF5476	0.71	-0.1
106,873	+		GFF5476	0.71	+1.4
106,874	-		GFF5476	0.71	+0.9
106,874	-		GFF5476	0.71	+1.4
106,874	-		GFF5476	0.71	-0.1
106,874	-		GFF5476	0.71	-0.6
106,874	-		GFF5476	0.71	+0.7
106,874	-		GFF5476	0.71	+0.4
106,874	-		GFF5476	0.71	+0.2
106,874	-		GFF5476	0.71	-0.1
106,874	-		GFF5476	0.71	-1.3
106,874	-		GFF5476	0.71	-1.0
106,874	-		GFF5476	0.71	+0.5
107,044	+				-0.7
107,044	+				+0.4
107,044	+				-1.5
107,044	+				-0.2
107,044	+				+0.0
107,045	-				-0.6
107,045	-				-0.8
107,045	-				+0.1
107,045	-				+1.3
107,045	-				-0.1
107,045	-				-0.2
107,045	-				+0.3
107,045	-				+0.4
107,045	-				+0.5
107,045	-				+0.0
107,103	+				-0.0
107,103	+				+0.9
107,103	+				-0.0
107,103	+				-1.0
107,103	+				-1.1
107,103	+				-0.3
107,103	+				+1.9
107,103	+				+0.3
107,103	+				-1.8
107,103	+				-0.4
107,103	+				+0.4
107,103	+				-1.1
107,103	+				-0.0
107,103	+				-1.4
107,103	+				-0.9
107,103	+				+1.5
107,103	+				-0.5
107,103	+				+0.4
107,103	+				-0.7
107,104	-				-0.6
107,104	-				+0.0
107,104	-				-0.1
107,104	-				-0.4
107,104	-				+0.3
107,104	-				-0.1
107,104	-				+0.5
107,104	-				-2.5
107,104	-				-1.0
107,104	-				-1.0
107,104	-				+0.5
107,104	-				+0.4
107,104	-				+1.2
107,104	-				+0.8
107,104	-				+0.0
107,104	-				-0.2
107,104	-				+0.5
107,224	+				-0.0
107,224	+				+0.3
107,224	+				+0.5
107,224	+				-0.3
107,224	+				-1.3
107,224	+				-1.3
107,224	-				-0.6
107,225	-				-1.0
107,225	-				+0.1
107,225	-				-0.1
107,225	-				-0.2
107,225	-				-0.5
107,225	-				-0.1
107,225	-				+0.0
107,225	-				+0.5
107,225	-				-1.1
107,225	-				-0.7
107,225	-				-0.6
107,236	+				-0.1
107,236	+				+1.9
107,236	+				-0.1
107,236	+				+0.6
107,236	+				+0.4
107,236	+				-0.7
107,236	+				-0.9
107,236	+				-0.6
107,237	-				-0.4
107,237	-				+0.0
107,237	-				+0.3
107,237	-				-0.5
107,237	-				+0.3
107,237	-				-0.2
107,237	-				-0.5