Strain Fitness in Variovorax sp. SCN45 around GFF5217

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
79,153	-				-1.1
79,567	+		GFF5216	0.42	+0.5
79,568	-		GFF5216	0.42	+0.1
79,568	-		GFF5216	0.42	-0.0
79,649	-		GFF5216	0.57	+0.7
79,649	-		GFF5216	0.57	-1.3
79,649	-		GFF5216	0.57	-1.1
79,649	-		GFF5216	0.57	+0.3
79,649	-		GFF5216	0.57	+0.5
79,649	-		GFF5216	0.57	-0.1
79,649	-		GFF5216	0.57	-0.0
79,679	+		GFF5216	0.62	-0.7
79,679	+		GFF5216	0.62	-0.4
80,026	-				-1.3
80,026	-				-0.7
80,026	-				+0.6
80,073	-				+0.7
80,239	-				-0.3
80,272	-		GFF5217	0.13	-1.2
80,314	-		GFF5217	0.17	+0.6
80,619	+		GFF5217	0.46	-0.8
80,619	+		GFF5217	0.46	-0.7
80,668	-		GFF5217	0.51	-0.9
80,668	-		GFF5217	0.51	+0.0
80,754	+		GFF5217	0.59	-1.8
80,754	+		GFF5217	0.59	-0.9
80,754	+		GFF5217	0.59	-0.7
80,754	+		GFF5217	0.59	+0.5
80,754	+		GFF5217	0.59	-0.3
80,754	+		GFF5217	0.59	-1.0
80,755	-		GFF5217	0.59	-0.1
80,755	-		GFF5217	0.59	-1.6
80,994	+		GFF5217	0.82	-0.1
80,994	+		GFF5217	0.82	-0.3
80,994	+		GFF5217	0.82	-0.3
81,145	-				+0.3
81,461	-		GFF5218	0.24	-0.3
81,502	+		GFF5218	0.28	+0.0
81,502	-		GFF5218	0.28	-0.5
81,503	-		GFF5218	0.28	-0.7
81,599	-		GFF5218	0.37	+0.0
81,875	-		GFF5218	0.62	-0.9