Strain Fitness in Variovorax sp. SCN45 around GFF4983

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
82,331	+		GFF4981	0.88	-1.3
82,331	+		GFF4981	0.88	-2.2
82,331	+		GFF4981	0.88	-0.8
82,331	+		GFF4981	0.88	+1.3
82,331	+		GFF4981	0.88	-0.6
82,331	+		GFF4981	0.88	-0.4
82,331	+		GFF4981	0.88	-0.1
82,332	-		GFF4981	0.88	-0.6
82,332	-		GFF4981	0.88	+0.1
82,332	-		GFF4981	0.88	-0.1
82,332	-		GFF4981	0.88	+1.0
82,332	-		GFF4981	0.88	-0.7
82,332	-		GFF4981	0.88	-0.8
82,864	+		GFF4982	0.48	-0.3
82,864	+		GFF4982	0.48	-0.5
82,864	+		GFF4982	0.48	-1.6
82,864	+		GFF4982	0.48	-1.2
82,864	+		GFF4982	0.48	-1.4
82,864	+		GFF4982	0.48	+0.2
82,864	+		GFF4982	0.48	+0.2
82,864	+		GFF4982	0.48	+0.3
82,865	-		GFF4982	0.48	+0.6
82,865	-		GFF4982	0.48	-1.2
82,865	-		GFF4982	0.48	+0.1
82,865	-		GFF4982	0.48	+0.5
82,865	-		GFF4982	0.48	-0.0
82,865	-		GFF4982	0.48	+2.1
82,865	-		GFF4982	0.48	+0.0
82,865	-		GFF4982	0.48	-0.8
83,424	+		GFF4983	0.18	-2.1
83,424	+		GFF4983	0.18	-0.6
83,424	+		GFF4983	0.18	-0.0
83,424	+		GFF4983	0.18	+0.2
83,424	+		GFF4983	0.18	-0.5
83,424	+		GFF4983	0.18	+0.8
83,425	-		GFF4983	0.18	-0.1
83,425	-		GFF4983	0.18	-0.9
83,425	-		GFF4983	0.18	-0.4
83,425	-		GFF4983	0.18	-0.1
83,425	-		GFF4983	0.18	-1.0
83,425	-		GFF4983	0.18	-2.0
83,425	-		GFF4983	0.18	+0.3
83,425	-		GFF4983	0.18	-0.2
83,425	-		GFF4983	0.18	+0.6
83,482	-		GFF4983	0.22	-0.4
83,557	-		GFF4983	0.28	-0.6
83,557	-		GFF4983	0.28	+0.8
83,557	-		GFF4983	0.28	-0.1
83,557	-		GFF4983	0.28	-0.9
83,557	-		GFF4983	0.28	-0.1
83,557	-		GFF4983	0.28	+0.6
83,661	+		GFF4983	0.35	-0.7
83,661	+		GFF4983	0.35	+0.3
83,661	+		GFF4983	0.35	-0.2
83,661	+		GFF4983	0.35	-0.2
83,661	+		GFF4983	0.35	-1.1
83,661	+		GFF4983	0.35	+0.6
83,662	-		GFF4983	0.35	+1.8
83,662	-		GFF4983	0.35	+1.1
83,826	+		GFF4983	0.48	-1.0
83,827	-		GFF4983	0.48	-0.7
83,827	-		GFF4983	0.48	-0.6
83,827	-		GFF4983	0.48	-0.8
83,827	-		GFF4983	0.48	+0.8
83,827	-		GFF4983	0.48	+0.2
84,120	+		GFF4983	0.69	-0.8
84,120	+		GFF4983	0.69	+1.1
84,120	+		GFF4983	0.69	-0.4
84,120	+		GFF4983	0.69	+0.1
84,120	+		GFF4983	0.69	+0.0
84,120	+		GFF4983	0.69	-0.6
84,120	+		GFF4983	0.69	-0.6
84,120	+		GFF4983	0.69	-0.1
84,120	+		GFF4983	0.69	-0.4
84,120	+		GFF4983	0.69	+0.0
84,121	-		GFF4983	0.69	-0.5
84,121	-		GFF4983	0.69	-0.3
84,121	-		GFF4983	0.69	-0.4
84,121	-		GFF4983	0.69	+0.2
84,121	-		GFF4983	0.69	-0.9
84,121	-		GFF4983	0.69	-2.0
84,121	-		GFF4983	0.69	-1.6
84,121	-		GFF4983	0.69	+1.0
84,121	-		GFF4983	0.69	+0.1
84,121	-		GFF4983	0.69	+0.0
84,121	-		GFF4983	0.69	+0.7
84,121	-		GFF4983	0.69	-0.5
84,121	-		GFF4983	0.69	-0.9
84,121	-		GFF4983	0.69	+0.9
84,121	-		GFF4983	0.69	-0.1
84,121	-		GFF4983	0.69	-0.2
84,121	-		GFF4983	0.69	-1.4
84,180	+		GFF4983	0.74	+0.1
84,180	+		GFF4983	0.74	-0.2
84,180	+		GFF4983	0.74	-0.0
84,180	+		GFF4983	0.74	+1.1
84,181	-		GFF4983	0.74	+1.5
84,181	-		GFF4983	0.74	+1.2
84,195	+		GFF4983	0.75	-0.2
84,195	+		GFF4983	0.75	+2.4
84,195	+		GFF4983	0.75	+0.4
84,196	-		GFF4983	0.75	+0.2
84,327	+		GFF4983	0.85	+1.5
84,327	+		GFF4983	0.85	-0.7
84,328	-		GFF4983	0.85	+2.1
84,328	-		GFF4983	0.85	+0.1
84,328	-		GFF4983	0.85	+1.8
84,384	+		GFF4983	0.89	+0.2
84,403	+				-1.4
84,403	+				-0.6
84,403	+				-0.6
84,404	-				+0.6
84,404	-				-1.0
84,404	-				+0.4
84,404	-				-0.1
84,404	-				+0.7
84,477	+				-1.5
84,477	+				-1.8
84,477	+				-1.5
84,477	+				+1.8
84,477	+				+0.0
84,477	+				+0.7
84,477	+				-0.9
84,477	+				+0.4
84,477	+				+0.6
84,477	+				-1.2
84,478	-				+0.1
84,478	-				-1.9
84,478	-				+0.8
84,478	-				-0.6
84,478	-				-0.0
84,478	-				-0.1
84,478	-				+0.5
84,478	-				+0.7
84,478	-				-1.5
84,478	-				-1.5
84,478	-				-0.5
84,478	-				+0.2
84,478	-				-0.4
84,478	-				-1.0
84,478	-				-0.5
84,478	-				-0.2
84,478	-				+0.0
84,478	-				-2.3
84,478	-				-0.1
84,478	-				-0.9
84,478	-				+0.4
84,478	-				+0.2
84,478	-				-0.6
84,533	+				-0.2
84,533	+				-0.3
84,533	+				-0.8
84,534	-				-1.2
84,534	-				-0.2
84,534	-				-0.8
84,534	-				+0.5
84,534	-				+0.2
84,534	-				-0.6
84,534	-				-1.4
84,534	-				-0.0
84,950	+		GFF4984	0.43	+1.1
84,951	-		GFF4984	0.43	+0.0
84,951	-		GFF4984	0.43	-0.7
84,951	-		GFF4984	0.43	-0.2
85,040	+		GFF4984	0.52	+0.1
85,040	+		GFF4984	0.52	+1.4
85,040	+		GFF4984	0.52	+0.8
85,040	+		GFF4984	0.52	-0.1
85,040	+		GFF4984	0.52	-2.1
85,040	+		GFF4984	0.52	-2.7
85,040	+		GFF4984	0.52	+0.4
85,041	-		GFF4984	0.52	-0.8
85,041	-		GFF4984	0.52	+1.5
85,041	-		GFF4984	0.52	-0.9
85,041	-		GFF4984	0.52	-0.5
85,041	-		GFF4984	0.52	+0.2
85,041	-		GFF4984	0.52	-0.1
85,041	-		GFF4984	0.52	-0.3
85,041	-		GFF4984	0.52	-0.3
85,041	-		GFF4984	0.52	+0.0
85,148	+		GFF4984	0.63	-0.3
85,148	+		GFF4984	0.63	-2.8
85,148	+		GFF4984	0.63	+0.1
85,148	+		GFF4984	0.63	+0.6
85,148	+		GFF4984	0.63	+0.1
85,148	+		GFF4984	0.63	-0.4
85,149	-		GFF4984	0.63	-1.5
85,149	-		GFF4984	0.63	-0.8
85,149	-		GFF4984	0.63	+0.1
85,149	-		GFF4984	0.63	+0.3
85,149	-		GFF4984	0.63	+1.8
85,149	-		GFF4984	0.63	-1.7
85,149	-		GFF4984	0.63	-0.1
85,149	-		GFF4984	0.63	+1.4
85,149	-		GFF4984	0.63	-0.7
85,149	-		GFF4984	0.63	+0.1
85,149	-		GFF4984	0.63	+0.4
85,149	-		GFF4984	0.63	+0.4
85,149	-		GFF4984	0.63	+0.7
85,149	-		GFF4984	0.63	-0.6
85,149	-		GFF4984	0.63	-0.1
85,172	+		GFF4984	0.65	-0.5
85,187	+		GFF4984	0.67	-0.6
85,187	+		GFF4984	0.67	-2.7
85,187	+		GFF4984	0.67	-0.4
85,187	+		GFF4984	0.67	+0.7
85,187	+		GFF4984	0.67	-0.2
85,188	-		GFF4984	0.67	+0.5
85,188	-		GFF4984	0.67	+0.8
85,188	-		GFF4984	0.67	+0.6
85,188	-		GFF4984	0.67	-0.8