Strain Fitness in Variovorax sp. SCN45 around GFF4937

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
30,133	+		GFF4936	0.41	+0.5
30,133	+		GFF4936	0.41	-0.7
30,134	-		GFF4936	0.41	-2.6
30,134	-		GFF4936	0.41	+0.8
30,145	+		GFF4936	0.42	-1.2
30,433	+		GFF4936	0.60	-1.0
30,433	+		GFF4936	0.60	-0.4
30,433	+		GFF4936	0.60	-0.6
30,434	-		GFF4936	0.60	-0.8
30,434	-		GFF4936	0.60	+0.6
30,434	-		GFF4936	0.60	-1.4
30,434	-		GFF4936	0.60	-0.9
30,434	-		GFF4936	0.60	+1.5
30,434	-		GFF4936	0.60	-0.3
30,449	-		GFF4936	0.61	-0.0
30,574	+		GFF4936	0.69	+1.1
30,574	+		GFF4936	0.69	+0.1
30,574	+		GFF4936	0.69	-0.4
30,575	-		GFF4936	0.69	+0.2
30,575	-		GFF4936	0.69	-0.2
30,871	+		GFF4936	0.88	-0.8
30,871	+		GFF4936	0.88	+1.6
30,872	-		GFF4936	0.88	-1.7
30,872	-		GFF4936	0.88	+0.5
30,889	+		GFF4936	0.89	-0.8
30,889	+		GFF4936	0.89	+0.7
30,889	+		GFF4936	0.89	-0.8
30,889	+		GFF4936	0.89	+0.8
30,889	+		GFF4936	0.89	-1.1
30,889	+		GFF4936	0.89	+1.6
30,889	+		GFF4936	0.89	-0.2
30,890	-		GFF4936	0.89	+0.5
30,890	-		GFF4936	0.89	-0.5
30,890	-		GFF4936	0.89	+1.3
31,146	-				-0.1
31,146	-				-0.2
31,211	+		GFF4937	0.20	+0.3
31,212	-		GFF4937	0.21	-0.2
31,212	-		GFF4937	0.21	-0.4
31,430	+		GFF4937	0.66	-0.5
31,430	+		GFF4937	0.66	+1.2
31,431	-		GFF4937	0.66	+0.8
31,431	-		GFF4937	0.66	-0.3
31,431	-		GFF4937	0.66	+1.2
31,847	-		GFF4938	0.35	-2.0
31,870	+		GFF4938	0.39	+0.5
31,870	+		GFF4938	0.39	-0.4
31,870	+		GFF4938	0.39	-1.1
31,870	+		GFF4938	0.39	-0.7
31,870	+		GFF4938	0.39	+0.5
31,870	+		GFF4938	0.39	-0.9
31,870	+		GFF4938	0.39	-0.9
31,871	-		GFF4938	0.39	+0.2
31,871	-		GFF4938	0.39	-0.3
31,871	-		GFF4938	0.39	-0.3
31,871	-		GFF4938	0.39	-0.5
31,871	-		GFF4938	0.39	+0.5
31,871	-		GFF4938	0.39	-0.3
31,871	-		GFF4938	0.39	+1.4
31,871	-		GFF4938	0.39	-0.5
32,068	+		GFF4938	0.65	-0.0
32,068	+		GFF4938	0.65	+0.4
32,068	+		GFF4938	0.65	-0.9
32,068	+		GFF4938	0.65	+0.5
32,068	+		GFF4938	0.65	-0.5
32,069	-		GFF4938	0.66	-0.5
32,069	-		GFF4938	0.66	-0.6
32,069	-		GFF4938	0.66	-0.1
32,069	-		GFF4938	0.66	+0.3
32,069	-		GFF4938	0.66	-0.6
32,069	-		GFF4938	0.66	+1.2
32,069	-		GFF4938	0.66	-1.1
32,155	+		GFF4938	0.77	+0.8
32,155	+		GFF4938	0.77	-0.1
32,155	+		GFF4938	0.77	-0.3
32,155	+		GFF4938	0.77	-0.2
32,155	+		GFF4938	0.77	+0.7
32,156	-		GFF4938	0.77	-0.1
32,156	-		GFF4938	0.77	-0.4
32,156	-		GFF4938	0.77	-0.1
32,156	-		GFF4938	0.77	+0.2
32,156	-		GFF4938	0.77	+0.3
32,156	-		GFF4938	0.77	-0.7
32,337	+				+0.5
32,338	-				-0.8
32,368	+				+1.0
32,368	+				-0.5
32,368	+				+1.2
32,368	+				-0.8
32,368	+				-0.2
32,368	+				-0.4
32,368	+				-1.5
32,368	+				-0.1
32,368	+				+0.4
32,368	+				-0.5
32,368	+				-0.1
32,368	+				-0.8
32,369	-				+1.2
32,369	-				-0.1
32,369	-				+0.0
32,369	-				-0.4
32,542	+		GFF4939	0.21	-1.5
32,542	+		GFF4939	0.21	+0.5
32,543	-		GFF4939	0.21	-0.8
32,543	-		GFF4939	0.21	+0.2
32,543	-		GFF4939	0.21	+0.1
32,543	-		GFF4939	0.21	-1.0
32,543	-		GFF4939	0.21	+0.4