Strain Fitness in Variovorax sp. SCN45 around GFF4856

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4854 and GFF4855 are separated by 0 nucleotidesGFF4855 and GFF4856 are separated by 24 nucleotidesGFF4856 and GFF4857 are separated by 24 nucleotides GFF4854 - Electron transfer flavoprotein, alpha subunit, at 223,723 to 224,655 GFF4854 GFF4855 - Electron transfer flavoprotein, beta subunit, at 224,656 to 225,405 GFF4855 GFF4856 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 225,430 to 227,211 GFF4856 GFF4857 - benzoate MFS transporter BenK, at 227,236 to 228,603 GFF4857 Position (kb) 225 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2 3at 224.647 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.658 kb on - strandat 224.658 kb on - strandat 224.852 kb on + strand, within GFF4855at 224.852 kb on + strand, within GFF4855at 224.852 kb on + strand, within GFF4855at 224.853 kb on - strand, within GFF4855at 224.853 kb on - strand, within GFF4855at 225.102 kb on + strand, within GFF4855at 225.102 kb on + strand, within GFF4855at 225.103 kb on - strand, within GFF4855at 225.111 kb on + strand, within GFF4855at 225.151 kb on + strand, within GFF4855at 225.151 kb on + strand, within GFF4855at 225.368 kb on + strandat 225.368 kb on + strandat 225.368 kb on + strandat 225.368 kb on + strandat 225.368 kb on + strandat 225.369 kb on - strandat 225.549 kb on + strandat 225.908 kb on + strand, within GFF4856at 225.908 kb on + strand, within GFF4856at 225.908 kb on + strand, within GFF4856at 225.908 kb on + strand, within GFF4856at 225.908 kb on + strand, within GFF4856at 225.909 kb on - strand, within GFF4856at 225.909 kb on - strand, within GFF4856at 225.909 kb on - strand, within GFF4856at 225.909 kb on - strand, within GFF4856at 225.965 kb on + strand, within GFF4856at 225.965 kb on + strand, within GFF4856at 225.965 kb on + strand, within GFF4856at 225.965 kb on + strand, within GFF4856at 225.965 kb on + strand, within GFF4856at 226.023 kb on + strand, within GFF4856at 226.023 kb on + strand, within GFF4856at 226.023 kb on + strand, within GFF4856at 226.024 kb on - strand, within GFF4856at 226.133 kb on + strand, within GFF4856at 226.134 kb on - strand, within GFF4856at 226.134 kb on - strand, within GFF4856at 226.134 kb on - strand, within GFF4856at 226.260 kb on - strand, within GFF4856at 226.260 kb on - strand, within GFF4856at 226.278 kb on - strand, within GFF4856at 226.382 kb on + strand, within GFF4856at 226.382 kb on + strand, within GFF4856at 226.514 kb on + strand, within GFF4856at 226.515 kb on - strand, within GFF4856at 226.652 kb on + strand, within GFF4856at 226.653 kb on - strand, within GFF4856at 226.653 kb on - strand, within GFF4856at 226.669 kb on + strand, within GFF4856at 227.069 kb on + strandat 227.070 kb on - strandat 227.070 kb on - strandat 227.070 kb on - strandat 227.074 kb on - strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.197 kb on + strandat 227.198 kb on - strandat 227.198 kb on - strandat 227.198 kb on - strandat 227.198 kb on - strandat 227.198 kb on - strandat 227.198 kb on - strandat 227.198 kb on - strandat 227.198 kb on - strandat 227.201 kb on + strandat 227.201 kb on + strandat 227.202 kb on - strandat 227.202 kb on - strandat 227.202 kb on - strandat 227.202 kb on - strandat 227.202 kb on - strandat 227.202 kb on - strandat 227.416 kb on + strand, within GFF4857at 227.417 kb on - strand, within GFF4857at 227.510 kb on + strand, within GFF4857at 227.511 kb on - strand, within GFF4857at 227.511 kb on - strand, within GFF4857at 227.511 kb on - strand, within GFF4857at 227.516 kb on + strand, within GFF4857at 227.516 kb on + strand, within GFF4857at 227.516 kb on + strand, within GFF4857at 227.516 kb on + strand, within GFF4857at 227.516 kb on + strand, within GFF4857at 227.517 kb on - strand, within GFF4857at 227.517 kb on - strand, within GFF4857at 227.517 kb on - strand, within GFF4857at 227.517 kb on - strand, within GFF4857at 227.517 kb on - strand, within GFF4857at 227.517 kb on - strand, within GFF4857at 227.517 kb on - strand, within GFF4857at 227.570 kb on + strand, within GFF4857at 227.570 kb on + strand, within GFF4857at 227.606 kb on + strand, within GFF4857at 227.606 kb on + strand, within GFF4857at 227.606 kb on + strand, within GFF4857at 227.606 kb on + strand, within GFF4857at 227.606 kb on + strand, within GFF4857at 227.607 kb on - strand, within GFF4857at 227.607 kb on - strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.630 kb on + strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.631 kb on - strand, within GFF4857at 227.750 kb on + strand, within GFF4857at 227.751 kb on - strand, within GFF4857at 227.760 kb on + strand, within GFF4857at 227.761 kb on - strand, within GFF4857at 227.795 kb on + strand, within GFF4857at 227.795 kb on + strand, within GFF4857at 227.795 kb on + strand, within GFF4857at 227.795 kb on + strand, within GFF4857at 227.796 kb on - strand, within GFF4857at 227.796 kb on - strand, within GFF4857at 227.796 kb on - strand, within GFF4857at 227.796 kb on - strand, within GFF4857at 227.796 kb on - strand, within GFF4857at 227.955 kb on + strand, within GFF4857at 227.956 kb on - strand, within GFF4857at 228.002 kb on + strand, within GFF4857at 228.002 kb on + strand, within GFF4857at 228.002 kb on + strand, within GFF4857at 228.002 kb on + strand, within GFF4857at 228.002 kb on + strand, within GFF4857at 228.002 kb on + strand, within GFF4857at 228.002 kb on + strand, within GFF4857at 228.002 kb on + strand, within GFF4857at 228.003 kb on - strand, within GFF4857at 228.003 kb on - strand, within GFF4857at 228.003 kb on - strand, within GFF4857at 228.003 kb on - strand, within GFF4857at 228.089 kb on + strand, within GFF4857at 228.089 kb on + strand, within GFF4857at 228.194 kb on + strand, within GFF4857at 228.195 kb on - strand, within GFF4857at 228.195 kb on - strand, within GFF4857

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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224,647 + -0.1
224,657 + -0.7
224,657 + +0.4
224,657 + -0.7
224,657 + +0.4
224,657 + -0.0
224,657 + -1.1
224,657 + -0.8
224,658 - +0.5
224,658 - -0.1
224,852 + GFF4855 0.26 -2.0
224,852 + GFF4855 0.26 +1.0
224,852 + GFF4855 0.26 +1.4
224,853 - GFF4855 0.26 -0.7
224,853 - GFF4855 0.26 -0.4
225,102 + GFF4855 0.59 -0.6
225,102 + GFF4855 0.59 -0.6
225,103 - GFF4855 0.60 -0.8
225,111 + GFF4855 0.61 +1.5
225,151 + GFF4855 0.66 +0.0
225,151 + GFF4855 0.66 +0.4
225,368 + +0.0
225,368 + -2.5
225,368 + -0.1
225,368 + -0.2
225,368 + -0.3
225,369 - +0.4
225,549 + -0.5
225,908 + GFF4856 0.27 -1.3
225,908 + GFF4856 0.27 +0.7
225,908 + GFF4856 0.27 -0.2
225,908 + GFF4856 0.27 -1.2
225,908 + GFF4856 0.27 -0.9
225,909 - GFF4856 0.27 +0.1
225,909 - GFF4856 0.27 -0.2
225,909 - GFF4856 0.27 +0.3
225,909 - GFF4856 0.27 -0.3
225,965 + GFF4856 0.30 +0.6
225,965 + GFF4856 0.30 -0.6
225,965 + GFF4856 0.30 -1.1
225,965 + GFF4856 0.30 -1.1
225,965 + GFF4856 0.30 +0.4
226,023 + GFF4856 0.33 -0.2
226,023 + GFF4856 0.33 -0.7
226,023 + GFF4856 0.33 -1.1
226,024 - GFF4856 0.33 -0.4
226,133 + GFF4856 0.39 +0.4
226,134 - GFF4856 0.40 -1.0
226,134 - GFF4856 0.40 -0.8
226,134 - GFF4856 0.40 +1.2
226,260 - GFF4856 0.47 +0.4
226,260 - GFF4856 0.47 -0.0
226,278 - GFF4856 0.48 -0.9
226,382 + GFF4856 0.53 -1.3
226,382 + GFF4856 0.53 +0.0
226,514 + GFF4856 0.61 +0.6
226,515 - GFF4856 0.61 +0.1
226,652 + GFF4856 0.69 -0.7
226,653 - GFF4856 0.69 -0.4
226,653 - GFF4856 0.69 -0.1
226,669 + GFF4856 0.70 -0.3
227,069 + -1.3
227,070 - -0.5
227,070 - -0.6
227,070 - -0.6
227,074 - +0.8
227,197 + -1.8
227,197 + -0.2
227,197 + -0.6
227,197 + -1.0
227,197 + -2.7
227,197 + +0.3
227,197 + +1.2
227,197 + -0.3
227,197 + +1.4
227,197 + +0.4
227,198 - +0.3
227,198 - +0.0
227,198 - -0.5
227,198 - -2.0
227,198 - +2.0
227,198 - -0.8
227,198 - +1.4
227,198 - +0.4
227,201 + -0.3
227,201 + +0.3
227,202 - -0.5
227,202 - +0.2
227,202 - +0.0
227,202 - +0.1
227,202 - +1.9
227,202 - -1.4
227,416 + GFF4857 0.13 -0.6
227,417 - GFF4857 0.13 -2.7
227,510 + GFF4857 0.20 -0.9
227,511 - GFF4857 0.20 -1.4
227,511 - GFF4857 0.20 -0.3
227,511 - GFF4857 0.20 +0.5
227,516 + GFF4857 0.20 -0.0
227,516 + GFF4857 0.20 +0.2
227,516 + GFF4857 0.20 +0.0
227,516 + GFF4857 0.20 +0.8
227,516 + GFF4857 0.20 -0.2
227,517 - GFF4857 0.21 -1.6
227,517 - GFF4857 0.21 -2.6
227,517 - GFF4857 0.21 -0.7
227,517 - GFF4857 0.21 -0.7
227,517 - GFF4857 0.21 +0.3
227,517 - GFF4857 0.21 +0.1
227,517 - GFF4857 0.21 +0.2
227,570 + GFF4857 0.24 +1.4
227,570 + GFF4857 0.24 +0.2
227,606 + GFF4857 0.27 +0.3
227,606 + GFF4857 0.27 -1.0
227,606 + GFF4857 0.27 +0.6
227,606 + GFF4857 0.27 -0.3
227,606 + GFF4857 0.27 -0.1
227,607 - GFF4857 0.27 -0.6
227,607 - GFF4857 0.27 +0.8
227,630 + GFF4857 0.29 +0.5
227,630 + GFF4857 0.29 +1.0
227,630 + GFF4857 0.29 -1.5
227,630 + GFF4857 0.29 -1.0
227,630 + GFF4857 0.29 -2.4
227,630 + GFF4857 0.29 +1.6
227,630 + GFF4857 0.29 -0.8
227,630 + GFF4857 0.29 +0.1
227,630 + GFF4857 0.29 +0.9
227,630 + GFF4857 0.29 +3.0
227,630 + GFF4857 0.29 -0.8
227,630 + GFF4857 0.29 -0.9
227,630 + GFF4857 0.29 -0.0
227,630 + GFF4857 0.29 -1.0
227,630 + GFF4857 0.29 -0.1
227,630 + GFF4857 0.29 +0.2
227,630 + GFF4857 0.29 +0.6
227,630 + GFF4857 0.29 -1.4
227,630 + GFF4857 0.29 +0.0
227,631 - GFF4857 0.29 -1.5
227,631 - GFF4857 0.29 -1.2
227,631 - GFF4857 0.29 -0.9
227,631 - GFF4857 0.29 -0.8
227,631 - GFF4857 0.29 -0.3
227,631 - GFF4857 0.29 -1.5
227,631 - GFF4857 0.29 +0.4
227,631 - GFF4857 0.29 +1.4
227,631 - GFF4857 0.29 +1.4
227,631 - GFF4857 0.29 -1.5
227,631 - GFF4857 0.29 +0.3
227,631 - GFF4857 0.29 +0.3
227,631 - GFF4857 0.29 +0.4
227,631 - GFF4857 0.29 +0.6
227,631 - GFF4857 0.29 -0.2
227,750 + GFF4857 0.38 -1.2
227,751 - GFF4857 0.38 +1.0
227,760 + GFF4857 0.38 +0.0
227,761 - GFF4857 0.38 -0.4
227,795 + GFF4857 0.41 -0.0
227,795 + GFF4857 0.41 +0.1
227,795 + GFF4857 0.41 +0.4
227,795 + GFF4857 0.41 -1.6
227,796 - GFF4857 0.41 -0.5
227,796 - GFF4857 0.41 -1.0
227,796 - GFF4857 0.41 -0.1
227,796 - GFF4857 0.41 +0.0
227,796 - GFF4857 0.41 -1.5
227,955 + GFF4857 0.53 +0.3
227,956 - GFF4857 0.53 -0.6
228,002 + GFF4857 0.56 -0.7
228,002 + GFF4857 0.56 -0.8
228,002 + GFF4857 0.56 -0.2
228,002 + GFF4857 0.56 -1.2
228,002 + GFF4857 0.56 -0.5
228,002 + GFF4857 0.56 -0.4
228,002 + GFF4857 0.56 -0.0
228,002 + GFF4857 0.56 -0.6
228,003 - GFF4857 0.56 -0.6
228,003 - GFF4857 0.56 -0.5
228,003 - GFF4857 0.56 +1.1
228,003 - GFF4857 0.56 -0.3
228,089 + GFF4857 0.62 -0.5
228,089 + GFF4857 0.62 -0.4
228,194 + GFF4857 0.70 -0.2
228,195 - GFF4857 0.70 -0.4
228,195 - GFF4857 0.70 -1.4

Or see this region's nucleotide sequence