Strain Fitness in Variovorax sp. SCN45 around GFF4737

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4735 and GFF4736 overlap by 4 nucleotidesGFF4736 and GFF4737 are separated by 13 nucleotidesGFF4737 and GFF4738 are separated by 330 nucleotides GFF4735 - Nitrate ABC transporter, ATP-binding protein, at 101,244 to 102,053 GFF4735 GFF4736 - Nitrate ABC transporter, permease protein, at 102,050 to 102,970 GFF4736 GFF4737 - Nitrate ABC transporter, substrate-binding protein, at 102,984 to 104,228 GFF4737 GFF4738 - Response regulator NasT, at 104,559 to 105,875 GFF4738 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -2 -1 0 1 2at 102.034 kb on + strandat 102.034 kb on + strandat 102.034 kb on + strandat 102.035 kb on - strandat 102.282 kb on + strand, within GFF4736at 102.282 kb on + strand, within GFF4736at 102.282 kb on + strand, within GFF4736at 102.282 kb on + strand, within GFF4736at 102.282 kb on + strand, within GFF4736at 102.282 kb on + strand, within GFF4736at 102.282 kb on + strand, within GFF4736at 102.283 kb on - strand, within GFF4736at 102.360 kb on + strand, within GFF4736at 102.361 kb on - strand, within GFF4736at 102.361 kb on - strand, within GFF4736at 102.675 kb on + strand, within GFF4736at 102.675 kb on + strand, within GFF4736at 102.676 kb on - strand, within GFF4736at 102.676 kb on - strand, within GFF4736at 102.676 kb on - strand, within GFF4736at 102.676 kb on - strand, within GFF4736at 102.676 kb on - strand, within GFF4736at 103.012 kb on + strandat 103.012 kb on + strandat 103.117 kb on + strand, within GFF4737at 103.117 kb on + strand, within GFF4737at 103.117 kb on + strand, within GFF4737at 103.117 kb on + strand, within GFF4737at 103.117 kb on + strand, within GFF4737at 103.118 kb on - strand, within GFF4737at 103.118 kb on - strand, within GFF4737at 103.118 kb on - strand, within GFF4737at 103.156 kb on + strand, within GFF4737at 103.156 kb on + strand, within GFF4737at 103.157 kb on - strand, within GFF4737at 103.225 kb on + strand, within GFF4737at 103.225 kb on + strand, within GFF4737at 103.225 kb on + strand, within GFF4737at 103.226 kb on - strand, within GFF4737at 103.252 kb on + strand, within GFF4737at 103.252 kb on + strand, within GFF4737at 103.252 kb on + strand, within GFF4737at 103.253 kb on - strand, within GFF4737at 103.253 kb on - strand, within GFF4737at 103.303 kb on + strand, within GFF4737at 103.304 kb on - strand, within GFF4737at 103.351 kb on + strand, within GFF4737at 103.352 kb on - strand, within GFF4737at 103.352 kb on - strand, within GFF4737at 103.352 kb on - strand, within GFF4737at 103.352 kb on - strand, within GFF4737at 103.655 kb on - strand, within GFF4737at 103.702 kb on + strand, within GFF4737at 103.702 kb on + strand, within GFF4737at 103.750 kb on + strand, within GFF4737at 103.750 kb on + strand, within GFF4737at 103.750 kb on + strand, within GFF4737at 103.750 kb on + strand, within GFF4737at 103.751 kb on - strand, within GFF4737at 103.751 kb on - strand, within GFF4737at 103.913 kb on - strand, within GFF4737at 103.913 kb on - strand, within GFF4737at 103.924 kb on + strand, within GFF4737at 103.924 kb on + strand, within GFF4737at 103.925 kb on - strand, within GFF4737at 104.017 kb on + strand, within GFF4737at 104.018 kb on - strand, within GFF4737at 104.018 kb on - strand, within GFF4737at 104.399 kb on + strandat 104.399 kb on + strandat 104.399 kb on + strandat 104.399 kb on + strandat 104.399 kb on + strandat 104.400 kb on - strandat 104.400 kb on - strandat 104.400 kb on - strandat 104.593 kb on + strandat 104.593 kb on + strandat 104.593 kb on + strandat 104.593 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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102,034 + -1.9
102,034 + -1.9
102,034 + -0.7
102,035 - -0.7
102,282 + GFF4736 0.25 +0.0
102,282 + GFF4736 0.25 +0.1
102,282 + GFF4736 0.25 -0.5
102,282 + GFF4736 0.25 -0.9
102,282 + GFF4736 0.25 -0.3
102,282 + GFF4736 0.25 +1.4
102,282 + GFF4736 0.25 +1.0
102,283 - GFF4736 0.25 +1.6
102,360 + GFF4736 0.34 +0.4
102,361 - GFF4736 0.34 +0.1
102,361 - GFF4736 0.34 -0.2
102,675 + GFF4736 0.68 -0.8
102,675 + GFF4736 0.68 +0.9
102,676 - GFF4736 0.68 -0.7
102,676 - GFF4736 0.68 -0.1
102,676 - GFF4736 0.68 -0.6
102,676 - GFF4736 0.68 +0.6
102,676 - GFF4736 0.68 +0.5
103,012 + -0.2
103,012 + +0.6
103,117 + GFF4737 0.11 -0.1
103,117 + GFF4737 0.11 -1.8
103,117 + GFF4737 0.11 -1.2
103,117 + GFF4737 0.11 +0.6
103,117 + GFF4737 0.11 +0.5
103,118 - GFF4737 0.11 +0.7
103,118 - GFF4737 0.11 -0.3
103,118 - GFF4737 0.11 +0.2
103,156 + GFF4737 0.14 +0.6
103,156 + GFF4737 0.14 +1.8
103,157 - GFF4737 0.14 -0.1
103,225 + GFF4737 0.19 +0.3
103,225 + GFF4737 0.19 -0.1
103,225 + GFF4737 0.19 -1.4
103,226 - GFF4737 0.19 -0.1
103,252 + GFF4737 0.22 -0.1
103,252 + GFF4737 0.22 -0.1
103,252 + GFF4737 0.22 -0.1
103,253 - GFF4737 0.22 +0.1
103,253 - GFF4737 0.22 -0.0
103,303 + GFF4737 0.26 +0.3
103,304 - GFF4737 0.26 +1.0
103,351 + GFF4737 0.29 -0.0
103,352 - GFF4737 0.30 -0.8
103,352 - GFF4737 0.30 +0.2
103,352 - GFF4737 0.30 -1.1
103,352 - GFF4737 0.30 -0.0
103,655 - GFF4737 0.54 +0.4
103,702 + GFF4737 0.58 -0.6
103,702 + GFF4737 0.58 +0.2
103,750 + GFF4737 0.62 +1.4
103,750 + GFF4737 0.62 -2.0
103,750 + GFF4737 0.62 -0.6
103,750 + GFF4737 0.62 +1.2
103,751 - GFF4737 0.62 -1.5
103,751 - GFF4737 0.62 +0.3
103,913 - GFF4737 0.75 -0.5
103,913 - GFF4737 0.75 +0.7
103,924 + GFF4737 0.76 +0.1
103,924 + GFF4737 0.76 +0.1
103,925 - GFF4737 0.76 -0.3
104,017 + GFF4737 0.83 -0.2
104,018 - GFF4737 0.83 -1.8
104,018 - GFF4737 0.83 +0.4
104,399 + +0.3
104,399 + -0.5
104,399 + +0.4
104,399 + -1.1
104,399 + -1.4
104,400 - -1.4
104,400 - -0.7
104,400 - +0.1
104,593 + +0.3
104,593 + -1.1
104,593 + -0.9
104,593 + +0.7

Or see this region's nucleotide sequence