Strain Fitness in Variovorax sp. SCN45 around GFF4677

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4676 and GFF4677 are separated by 131 nucleotidesGFF4677 and GFF4678 overlap by 1 nucleotides GFF4676 - hypothetical protein, at 33,766 to 34,902 GFF4676 GFF4677 - Small-conductance mechanosensitive channel, at 35,034 to 36,113 GFF4677 GFF4678 - FIG00348290: hypothetical protein, at 36,113 to 38,359 GFF4678 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 34.040 kb on + strand, within GFF4676at 34.040 kb on + strand, within GFF4676at 34.041 kb on - strand, within GFF4676at 34.041 kb on - strand, within GFF4676at 34.041 kb on - strand, within GFF4676at 34.151 kb on + strand, within GFF4676at 34.151 kb on + strand, within GFF4676at 34.152 kb on - strand, within GFF4676at 34.152 kb on - strand, within GFF4676at 34.152 kb on - strand, within GFF4676at 34.226 kb on + strand, within GFF4676at 34.227 kb on - strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.331 kb on + strand, within GFF4676at 34.332 kb on - strand, within GFF4676at 34.332 kb on - strand, within GFF4676at 34.332 kb on - strand, within GFF4676at 34.332 kb on - strand, within GFF4676at 34.332 kb on - strand, within GFF4676at 34.332 kb on - strand, within GFF4676at 34.523 kb on + strand, within GFF4676at 34.524 kb on - strand, within GFF4676at 34.524 kb on - strand, within GFF4676at 34.524 kb on - strand, within GFF4676at 34.524 kb on - strand, within GFF4676at 34.524 kb on - strand, within GFF4676at 34.524 kb on - strand, within GFF4676at 34.524 kb on - strand, within GFF4676at 34.526 kb on + strand, within GFF4676at 34.526 kb on + strand, within GFF4676at 34.527 kb on - strand, within GFF4676at 34.527 kb on - strand, within GFF4676at 34.627 kb on + strand, within GFF4676at 34.627 kb on + strand, within GFF4676at 34.627 kb on + strand, within GFF4676at 34.627 kb on + strand, within GFF4676at 34.627 kb on + strand, within GFF4676at 34.628 kb on - strand, within GFF4676at 34.628 kb on - strand, within GFF4676at 34.628 kb on - strand, within GFF4676at 34.628 kb on - strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.694 kb on + strand, within GFF4676at 34.695 kb on - strand, within GFF4676at 34.695 kb on - strand, within GFF4676at 34.695 kb on - strand, within GFF4676at 34.695 kb on - strand, within GFF4676at 34.695 kb on - strand, within GFF4676at 34.695 kb on - strand, within GFF4676at 34.695 kb on - strand, within GFF4676at 34.697 kb on + strand, within GFF4676at 34.697 kb on + strand, within GFF4676at 34.697 kb on + strand, within GFF4676at 34.697 kb on + strand, within GFF4676at 34.697 kb on + strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.698 kb on - strand, within GFF4676at 34.728 kb on - strand, within GFF4676at 34.728 kb on - strand, within GFF4676at 34.728 kb on - strand, within GFF4676at 34.804 kb on + strandat 34.805 kb on + strandat 34.805 kb on + strandat 34.805 kb on + strandat 34.805 kb on + strandat 34.805 kb on + strandat 34.805 kb on + strandat 34.805 kb on + strandat 34.806 kb on - strandat 34.806 kb on - strandat 34.958 kb on + strandat 34.972 kb on + strandat 34.972 kb on + strandat 35.330 kb on - strand, within GFF4677at 35.338 kb on + strand, within GFF4677at 35.407 kb on + strand, within GFF4677at 35.407 kb on + strand, within GFF4677at 35.407 kb on + strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 35.408 kb on - strand, within GFF4677at 36.026 kb on + strandat 36.073 kb on + strandat 36.099 kb on + strandat 36.099 kb on + strandat 36.100 kb on - strandat 36.100 kb on - strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.331 kb on + strandat 36.332 kb on - strandat 36.332 kb on - strandat 36.332 kb on - strandat 36.459 kb on + strand, within GFF4678at 36.459 kb on + strand, within GFF4678at 36.459 kb on + strand, within GFF4678at 36.459 kb on + strand, within GFF4678at 36.459 kb on + strand, within GFF4678at 36.460 kb on - strand, within GFF4678at 36.460 kb on - strand, within GFF4678at 36.460 kb on - strand, within GFF4678at 36.564 kb on + strand, within GFF4678at 36.564 kb on + strand, within GFF4678at 36.564 kb on + strand, within GFF4678at 36.564 kb on + strand, within GFF4678at 36.565 kb on - strand, within GFF4678at 36.565 kb on - strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.723 kb on + strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.724 kb on - strand, within GFF4678at 36.824 kb on + strand, within GFF4678at 36.824 kb on + strand, within GFF4678at 36.825 kb on - strand, within GFF4678at 36.825 kb on - strand, within GFF4678at 36.864 kb on + strand, within GFF4678at 36.865 kb on - strand, within GFF4678at 36.865 kb on - strand, within GFF4678at 37.065 kb on + strand, within GFF4678at 37.065 kb on + strand, within GFF4678at 37.066 kb on - strand, within GFF4678at 37.066 kb on - strand, within GFF4678

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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34,040 + GFF4676 0.24 -1.6
34,040 + GFF4676 0.24 +0.4
34,041 - GFF4676 0.24 +0.1
34,041 - GFF4676 0.24 -0.4
34,041 - GFF4676 0.24 +0.8
34,151 + GFF4676 0.34 +2.0
34,151 + GFF4676 0.34 -0.4
34,152 - GFF4676 0.34 -0.6
34,152 - GFF4676 0.34 -1.3
34,152 - GFF4676 0.34 +0.1
34,226 + GFF4676 0.40 +0.9
34,227 - GFF4676 0.41 -0.5
34,331 + GFF4676 0.50 +0.7
34,331 + GFF4676 0.50 +0.8
34,331 + GFF4676 0.50 +0.4
34,331 + GFF4676 0.50 -0.0
34,331 + GFF4676 0.50 +0.0
34,331 + GFF4676 0.50 -0.7
34,331 + GFF4676 0.50 +0.6
34,331 + GFF4676 0.50 -0.5
34,331 + GFF4676 0.50 -0.6
34,331 + GFF4676 0.50 +0.0
34,331 + GFF4676 0.50 -0.5
34,331 + GFF4676 0.50 -0.4
34,332 - GFF4676 0.50 -1.3
34,332 - GFF4676 0.50 +2.0
34,332 - GFF4676 0.50 +0.7
34,332 - GFF4676 0.50 -0.5
34,332 - GFF4676 0.50 -1.7
34,332 - GFF4676 0.50 -0.5
34,523 + GFF4676 0.67 -0.8
34,524 - GFF4676 0.67 +0.2
34,524 - GFF4676 0.67 +1.2
34,524 - GFF4676 0.67 -0.2
34,524 - GFF4676 0.67 +0.3
34,524 - GFF4676 0.67 +0.0
34,524 - GFF4676 0.67 -2.6
34,524 - GFF4676 0.67 -0.4
34,526 + GFF4676 0.67 -0.6
34,526 + GFF4676 0.67 +1.3
34,527 - GFF4676 0.67 -0.4
34,527 - GFF4676 0.67 -0.6
34,627 + GFF4676 0.76 -0.4
34,627 + GFF4676 0.76 -2.0
34,627 + GFF4676 0.76 -0.3
34,627 + GFF4676 0.76 -0.3
34,627 + GFF4676 0.76 -0.5
34,628 - GFF4676 0.76 -0.9
34,628 - GFF4676 0.76 -0.7
34,628 - GFF4676 0.76 +0.3
34,628 - GFF4676 0.76 -0.7
34,694 + GFF4676 0.82 -1.6
34,694 + GFF4676 0.82 -1.4
34,694 + GFF4676 0.82 -0.2
34,694 + GFF4676 0.82 -2.3
34,694 + GFF4676 0.82 -0.0
34,694 + GFF4676 0.82 -0.3
34,694 + GFF4676 0.82 -1.1
34,694 + GFF4676 0.82 +0.2
34,694 + GFF4676 0.82 -0.2
34,695 - GFF4676 0.82 +0.4
34,695 - GFF4676 0.82 -0.2
34,695 - GFF4676 0.82 -0.1
34,695 - GFF4676 0.82 -0.2
34,695 - GFF4676 0.82 -0.2
34,695 - GFF4676 0.82 +0.2
34,695 - GFF4676 0.82 +0.5
34,697 + GFF4676 0.82 -1.2
34,697 + GFF4676 0.82 +1.6
34,697 + GFF4676 0.82 +0.7
34,697 + GFF4676 0.82 +0.2
34,697 + GFF4676 0.82 +0.4
34,698 - GFF4676 0.82 -0.9
34,698 - GFF4676 0.82 -0.2
34,698 - GFF4676 0.82 +0.0
34,698 - GFF4676 0.82 +1.7
34,698 - GFF4676 0.82 -0.5
34,698 - GFF4676 0.82 -1.9
34,698 - GFF4676 0.82 -0.4
34,698 - GFF4676 0.82 -2.6
34,698 - GFF4676 0.82 +0.2
34,698 - GFF4676 0.82 -0.5
34,728 - GFF4676 0.85 +0.3
34,728 - GFF4676 0.85 -0.5
34,728 - GFF4676 0.85 +1.0
34,804 + -1.3
34,805 + -0.9
34,805 + +0.8
34,805 + +0.0
34,805 + +0.1
34,805 + -0.9
34,805 + -0.4
34,805 + -0.1
34,806 - -0.5
34,806 - -1.0
34,958 + -0.1
34,972 + -1.1
34,972 + +0.3
35,330 - GFF4677 0.27 -0.4
35,338 + GFF4677 0.28 -0.9
35,407 + GFF4677 0.35 -0.2
35,407 + GFF4677 0.35 -0.7
35,407 + GFF4677 0.35 -1.2
35,408 - GFF4677 0.35 -0.6
35,408 - GFF4677 0.35 -0.9
35,408 - GFF4677 0.35 -1.0
35,408 - GFF4677 0.35 -0.1
35,408 - GFF4677 0.35 +0.4
35,408 - GFF4677 0.35 -0.2
35,408 - GFF4677 0.35 +0.0
35,408 - GFF4677 0.35 -0.6
35,408 - GFF4677 0.35 +0.4
35,408 - GFF4677 0.35 -1.1
36,026 + -0.6
36,073 + -0.4
36,099 + +1.4
36,099 + -0.2
36,100 - +0.6
36,100 - -0.8
36,331 + -0.2
36,331 + +0.3
36,331 + +0.6
36,331 + +0.9
36,331 + +0.0
36,331 + +0.1
36,332 - -0.3
36,332 - -0.0
36,332 - +1.1
36,459 + GFF4678 0.15 +0.4
36,459 + GFF4678 0.15 +0.4
36,459 + GFF4678 0.15 +1.8
36,459 + GFF4678 0.15 -0.1
36,459 + GFF4678 0.15 -0.4
36,460 - GFF4678 0.15 -1.5
36,460 - GFF4678 0.15 +0.6
36,460 - GFF4678 0.15 -0.6
36,564 + GFF4678 0.20 +0.1
36,564 + GFF4678 0.20 -0.7
36,564 + GFF4678 0.20 -0.4
36,564 + GFF4678 0.20 -0.4
36,565 - GFF4678 0.20 +0.0
36,565 - GFF4678 0.20 +0.7
36,723 + GFF4678 0.27 +0.0
36,723 + GFF4678 0.27 +0.1
36,723 + GFF4678 0.27 -0.2
36,723 + GFF4678 0.27 -0.1
36,723 + GFF4678 0.27 -0.6
36,724 - GFF4678 0.27 +0.4
36,724 - GFF4678 0.27 -1.0
36,724 - GFF4678 0.27 -0.2
36,724 - GFF4678 0.27 -0.8
36,724 - GFF4678 0.27 -0.2
36,724 - GFF4678 0.27 -0.9
36,724 - GFF4678 0.27 +0.4
36,824 + GFF4678 0.32 -0.6
36,824 + GFF4678 0.32 -0.4
36,825 - GFF4678 0.32 -1.2
36,825 - GFF4678 0.32 +0.1
36,864 + GFF4678 0.33 -0.4
36,865 - GFF4678 0.33 +0.3
36,865 - GFF4678 0.33 -1.3
37,065 + GFF4678 0.42 -0.2
37,065 + GFF4678 0.42 +0.2
37,066 - GFF4678 0.42 -0.3
37,066 - GFF4678 0.42 -1.4

Or see this region's nucleotide sequence