Strain Fitness in Variovorax sp. SCN45 around GFF4557

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4555 and GFF4556 overlap by 4 nucleotidesGFF4556 and GFF4557 overlap by 4 nucleotidesGFF4557 and GFF4558 overlap by 4 nucleotidesGFF4558 and GFF4559 are separated by 3 nucleotidesGFF4559 and GFF4560 are separated by 97 nucleotides GFF4555 - Putative transmembrane protein, at 192,074 to 192,829 GFF4555 GFF4556 - hypothetical protein, at 192,826 to 193,626 GFF4556 GFF4557 - Dihydroorotase (EC 3.5.2.3), at 193,623 to 194,654 GFF4557 GFF4558 - RNA polymerase ECF-type sigma factor, at 194,651 to 195,193 GFF4558 GFF4559 - Uncharacterized membrane protein Rmet_3714, at 195,197 to 195,406 GFF4559 GFF4560 - hypothetical protein, at 195,504 to 196,235 GFF4560 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2 3at 192.651 kb on + strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.695 kb on + strand, within GFF4555at 192.695 kb on + strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.232 kb on + strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.233 kb on - strand, within GFF4556at 193.505 kb on + strand, within GFF4556at 193.505 kb on + strand, within GFF4556at 193.505 kb on + strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.506 kb on - strand, within GFF4556at 193.532 kb on + strand, within GFF4556at 193.533 kb on - strand, within GFF4556at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.757 kb on - strand, within GFF4557at 193.757 kb on - strand, within GFF4557at 193.858 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.008 kb on + strand, within GFF4557at 194.008 kb on + strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.108 kb on - strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.353 kb on + strand, within GFF4557at 194.688 kb on + strandat 194.689 kb on - strandat 194.814 kb on + strand, within GFF4558at 194.814 kb on + strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 195.030 kb on + strand, within GFF4558at 195.088 kb on - strand, within GFF4558at 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.400 kb on - strandat 195.400 kb on - strandat 195.400 kb on - strandat 195.400 kb on - strandat 195.505 kb on + strandat 195.505 kb on + strandat 195.505 kb on + strandat 195.505 kb on + strandat 195.505 kb on + strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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192,651 + GFF4555 0.76 -0.4
192,652 - GFF4555 0.76 -0.5
192,652 - GFF4555 0.76 +0.1
192,652 - GFF4555 0.76 -0.1
192,695 + GFF4555 0.82 +0.2
192,695 + GFF4555 0.82 -0.2
192,696 - GFF4555 0.82 -0.2
192,696 - GFF4555 0.82 +0.1
192,696 - GFF4555 0.82 -0.8
192,696 - GFF4555 0.82 +0.2
193,232 + GFF4556 0.51 +0.8
193,232 + GFF4556 0.51 -0.4
193,232 + GFF4556 0.51 -0.7
193,232 + GFF4556 0.51 -0.1
193,232 + GFF4556 0.51 -0.9
193,232 + GFF4556 0.51 +0.3
193,232 + GFF4556 0.51 +1.2
193,233 - GFF4556 0.51 -0.5
193,233 - GFF4556 0.51 -0.0
193,233 - GFF4556 0.51 -0.6
193,233 - GFF4556 0.51 -0.2
193,233 - GFF4556 0.51 -0.2
193,233 - GFF4556 0.51 -1.6
193,233 - GFF4556 0.51 -0.6
193,233 - GFF4556 0.51 -0.5
193,233 - GFF4556 0.51 -0.4
193,505 + GFF4556 0.85 +0.5
193,505 + GFF4556 0.85 +1.2
193,505 + GFF4556 0.85 -1.3
193,506 - GFF4556 0.85 +3.3
193,506 - GFF4556 0.85 -1.6
193,506 - GFF4556 0.85 +0.6
193,506 - GFF4556 0.85 -0.8
193,506 - GFF4556 0.85 +0.9
193,506 - GFF4556 0.85 +0.5
193,532 + GFF4556 0.88 +1.3
193,533 - GFF4556 0.88 -0.3
193,756 + GFF4557 0.13 -2.1
193,756 + GFF4557 0.13 +1.7
193,756 + GFF4557 0.13 -0.6
193,756 + GFF4557 0.13 +0.7
193,757 - GFF4557 0.13 +1.3
193,757 - GFF4557 0.13 -0.1
193,858 + GFF4557 0.23 -0.3
194,005 + GFF4557 0.37 -0.8
194,005 + GFF4557 0.37 -0.1
194,005 + GFF4557 0.37 +0.2
194,006 - GFF4557 0.37 -1.4
194,006 - GFF4557 0.37 -1.2
194,006 - GFF4557 0.37 +0.7
194,006 - GFF4557 0.37 +2.3
194,008 + GFF4557 0.37 -0.8
194,008 + GFF4557 0.37 -1.0
194,009 - GFF4557 0.37 +0.7
194,009 - GFF4557 0.37 +1.2
194,009 - GFF4557 0.37 +0.2
194,009 - GFF4557 0.37 -0.8
194,050 + GFF4557 0.41 +1.7
194,050 + GFF4557 0.41 +1.2
194,050 + GFF4557 0.41 -0.3
194,050 + GFF4557 0.41 +0.2
194,051 - GFF4557 0.41 -2.1
194,051 - GFF4557 0.41 -0.3
194,051 - GFF4557 0.41 -2.7
194,107 + GFF4557 0.47 -0.3
194,107 + GFF4557 0.47 -1.3
194,107 + GFF4557 0.47 -0.6
194,108 - GFF4557 0.47 +2.7
194,296 + GFF4557 0.65 +1.7
194,296 + GFF4557 0.65 +0.2
194,296 + GFF4557 0.65 -2.6
194,296 + GFF4557 0.65 -1.3
194,296 + GFF4557 0.65 -0.8
194,297 - GFF4557 0.65 -0.3
194,297 - GFF4557 0.65 -1.3
194,297 - GFF4557 0.65 +0.2
194,297 - GFF4557 0.65 -0.6
194,297 - GFF4557 0.65 -1.6
194,297 - GFF4557 0.65 -0.7
194,297 - GFF4557 0.65 +2.3
194,297 - GFF4557 0.65 -0.3
194,353 + GFF4557 0.71 +1.0
194,688 + -0.2
194,689 - -1.4
194,814 + GFF4558 0.30 -1.8
194,814 + GFF4558 0.30 -1.7
194,815 - GFF4558 0.30 +1.3
194,815 - GFF4558 0.30 +0.4
194,815 - GFF4558 0.30 +0.9
194,815 - GFF4558 0.30 -0.0
194,815 - GFF4558 0.30 -0.2
195,030 + GFF4558 0.70 -0.6
195,088 - GFF4558 0.80 +0.6
195,399 + -0.5
195,399 + -0.2
195,399 + -1.1
195,399 + -2.3
195,399 + -0.3
195,399 + -0.1
195,399 + -1.4
195,399 + -0.2
195,399 + +0.7
195,399 + -0.6
195,399 + -1.6
195,399 + +1.2
195,399 + -2.3
195,399 + +0.5
195,399 + +0.0
195,400 - -0.5
195,400 - -0.4
195,400 - -0.9
195,400 - +0.1
195,505 + -0.7
195,505 + -0.9
195,505 + -1.7
195,505 + -0.5
195,505 + -1.5
195,506 - -1.7
195,506 - +0.4
195,506 - -0.4
195,506 - -1.0
195,506 - +1.2
195,506 - -0.1

Or see this region's nucleotide sequence