Strain Fitness in Variovorax sp. SCN45 around GFF4202

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
116,946	+		GFF4201	0.40	+0.2
116,947	-		GFF4201	0.40	-0.9
117,291	+		GFF4201	0.71	-0.6
117,291	+		GFF4201	0.71	-0.1
117,291	+		GFF4201	0.71	-0.6
117,291	+		GFF4201	0.71	-0.2
117,291	+		GFF4201	0.71	+0.3
117,292	-		GFF4201	0.71	-0.9
118,109	+		GFF4202	0.65	-0.2
118,109	+		GFF4202	0.65	+0.2
118,110	-		GFF4202	0.65	+0.3
118,358	+				+0.1
118,358	+				-0.3
118,358	+				-0.4
118,497	+				-0.0
118,498	-				+0.4
118,498	-				-0.7
118,498	-				+0.1
118,503	+				-0.9
119,197	+		GFF4203	0.39	-0.4
119,197	+		GFF4203	0.39	-0.3