Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3304 and GFF3305 are separated by 11 nucleotides GFF3305 and GFF3306 overlap by 20 nucleotides GFF3306 and GFF3307 are separated by 19 nucleotides
GFF3304 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 127,775 to 129,043
GFF3304
GFF3305 - hypothetical protein, at 129,055 to 129,624
GFF3305
GFF3306 - hypothetical protein, at 129,605 to 130,534
GFF3306
GFF3307 - FIG01161751: hypothetical protein, at 130,554 to 132,650
GFF3307
Position (kb) 129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.067 kb on + strand, within GFF3304 at 128.067 kb on + strand, within GFF3304 at 128.067 kb on + strand, within GFF3304 at 128.068 kb on - strand, within GFF3304 at 128.068 kb on - strand, within GFF3304 at 128.068 kb on - strand, within GFF3304 at 128.068 kb on - strand, within GFF3304 at 128.119 kb on - strand, within GFF3304 at 128.119 kb on - strand, within GFF3304 at 128.119 kb on - strand, within GFF3304 at 128.269 kb on - strand, within GFF3304 at 128.532 kb on + strand, within GFF3304 at 128.841 kb on + strand, within GFF3304 at 128.841 kb on + strand, within GFF3304 at 128.841 kb on + strand, within GFF3304 at 128.841 kb on + strand, within GFF3304 at 128.841 kb on + strand, within GFF3304 at 128.841 kb on + strand, within GFF3304 at 128.842 kb on - strand, within GFF3304 at 128.842 kb on - strand, within GFF3304 at 128.842 kb on - strand, within GFF3304 at 128.978 kb on - strand at 128.983 kb on + strand at 128.983 kb on + strand at 128.984 kb on - strand at 128.984 kb on - strand at 128.984 kb on - strand at 128.984 kb on - strand at 129.025 kb on + strand at 129.025 kb on + strand at 129.025 kb on + strand at 129.025 kb on + strand at 129.026 kb on - strand at 129.026 kb on - strand at 129.026 kb on - strand at 129.026 kb on - strand at 129.122 kb on + strand, within GFF3305 at 129.122 kb on + strand, within GFF3305 at 129.122 kb on + strand, within GFF3305 at 129.123 kb on - strand, within GFF3305 at 129.123 kb on - strand, within GFF3305 at 129.123 kb on - strand, within GFF3305 at 129.273 kb on - strand, within GFF3305 at 129.287 kb on + strand, within GFF3305 at 130.077 kb on + strand, within GFF3306 at 130.077 kb on + strand, within GFF3306 at 130.077 kb on + strand, within GFF3306 at 130.077 kb on + strand, within GFF3306 at 130.077 kb on + strand, within GFF3306 at 130.077 kb on + strand, within GFF3306 at 130.077 kb on + strand, within GFF3306 at 130.078 kb on - strand, within GFF3306 at 130.078 kb on - strand, within GFF3306 at 130.078 kb on - strand, within GFF3306
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 128,067 + GFF3304 0.23 -0.0 128,067 + GFF3304 0.23 -0.1 128,067 + GFF3304 0.23 +0.9 128,068 - GFF3304 0.23 +0.9 128,068 - GFF3304 0.23 +0.0 128,068 - GFF3304 0.23 -0.8 128,068 - GFF3304 0.23 -2.8 128,119 - GFF3304 0.27 +0.5 128,119 - GFF3304 0.27 -0.8 128,119 - GFF3304 0.27 +0.9 128,269 - GFF3304 0.39 -0.7 128,532 + GFF3304 0.60 +0.8 128,841 + GFF3304 0.84 -0.4 128,841 + GFF3304 0.84 -1.0 128,841 + GFF3304 0.84 +0.8 128,841 + GFF3304 0.84 -0.3 128,841 + GFF3304 0.84 +0.2 128,841 + GFF3304 0.84 -0.6 128,842 - GFF3304 0.84 -0.8 128,842 - GFF3304 0.84 -1.3 128,842 - GFF3304 0.84 +0.8 128,978 - +0.2 128,983 + +0.3 128,983 + -0.4 128,984 - +0.0 128,984 - -1.0 128,984 - +0.2 128,984 - -0.7 129,025 + +1.0 129,025 + -0.3 129,025 + -0.5 129,025 + -0.1 129,026 - -0.2 129,026 - +0.2 129,026 - +0.5 129,026 - -0.1 129,122 + GFF3305 0.12 -1.1 129,122 + GFF3305 0.12 -0.5 129,122 + GFF3305 0.12 -0.4 129,123 - GFF3305 0.12 +1.8 129,123 - GFF3305 0.12 -1.5 129,123 - GFF3305 0.12 -0.8 129,273 - GFF3305 0.38 +0.4 129,287 + GFF3305 0.41 -0.4 130,077 + GFF3306 0.51 -2.9 130,077 + GFF3306 0.51 +0.2 130,077 + GFF3306 0.51 +1.5 130,077 + GFF3306 0.51 +0.1 130,077 + GFF3306 0.51 +0.1 130,077 + GFF3306 0.51 +0.5 130,077 + GFF3306 0.51 +1.2 130,078 - GFF3306 0.51 -0.2 130,078 - GFF3306 0.51 -0.6 130,078 - GFF3306 0.51 +0.2
Or see this region's nucleotide sequence