Strain Fitness in Variovorax sp. SCN45 around GFF3224

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3222 and GFF3223 are separated by 1 nucleotidesGFF3223 and GFF3224 overlap by 4 nucleotidesGFF3224 and GFF3225 overlap by 4 nucleotides GFF3222 - no description, at 43,972 to 44,388 GFF3222 GFF3223 - no description, at 44,390 to 45,007 GFF3223 GFF3224 - no description, at 45,004 to 45,630 GFF3224 GFF3225 - hypothetical protein, at 45,627 to 47,885 GFF3225 Position (kb) 45 46Strain fitness (log2 ratio) -2 -1 0 1at 44.072 kb on + strand, within GFF3222at 45.566 kb on + strand, within GFF3224at 45.566 kb on + strand, within GFF3224at 45.567 kb on - strand, within GFF3224at 45.928 kb on + strand, within GFF3225at 46.133 kb on - strand, within GFF3225at 46.133 kb on - strand, within GFF3225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
remove
44,072 + GFF3222 0.24 +1.2
45,566 + GFF3224 0.90 +0.8
45,566 + GFF3224 0.90 +0.3
45,567 - GFF3224 0.90 -2.3
45,928 + GFF3225 0.13 -0.0
46,133 - GFF3225 0.22 +0.3
46,133 - GFF3225 0.22 -2.2

Or see this region's nucleotide sequence