Strain Fitness in Variovorax sp. SCN45 around GFF3192

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
7,708	+				-0.5
7,709	-				+0.7
7,927	+				+0.0
7,927	+				-0.1
7,928	-				+0.3
7,928	-				-0.3
7,943	+				-0.5
7,943	+				+0.1
7,944	-				-0.9
7,944	-				-1.5
7,944	-				-0.2
8,111	+		GFF3191	0.25	-1.7
8,112	-		GFF3191	0.25	+0.3
8,144	+		GFF3191	0.29	+1.0
8,144	+		GFF3191	0.29	-0.2
8,251	-		GFF3191	0.44	+0.0
8,251	-		GFF3191	0.44	-0.5
8,251	-		GFF3191	0.44	+0.8
8,251	-		GFF3191	0.44	+0.5
8,339	+		GFF3191	0.56	-0.3
8,367	+		GFF3191	0.60	-0.6
8,367	+		GFF3191	0.60	+0.4
8,368	-		GFF3191	0.60	+0.6
8,368	-		GFF3191	0.60	+0.0
8,368	-		GFF3191	0.60	+0.7
8,408	+		GFF3191	0.66	-0.4
8,469	+		GFF3191	0.74	-2.1
8,469	+		GFF3191	0.74	-0.6
8,470	-		GFF3191	0.74	-0.2
8,470	-		GFF3191	0.74	-0.2
8,471	+		GFF3191	0.74	-0.8
8,471	+		GFF3191	0.74	-0.9
8,471	+		GFF3191	0.74	-0.6
8,471	+		GFF3191	0.74	+0.1
8,471	+		GFF3191	0.74	+0.5
8,472	-		GFF3191	0.74	+1.1
8,472	-		GFF3191	0.74	-0.8
8,472	-		GFF3191	0.74	+0.4
8,676	-				+1.8
8,676	-				+0.6
8,685	+				-0.5
8,685	+				-0.5
8,686	-				-0.5
8,686	-				-0.5
8,763	+				-0.3
8,764	-				+0.1
8,771	+				-0.8
8,772	-				-0.4
8,863	+		GFF3192	0.16	+0.9
8,881	+		GFF3192	0.18	+0.6
8,882	-		GFF3192	0.18	-0.1
9,037	+		GFF3192	0.30	-0.5
9,037	+		GFF3192	0.30	+0.2
9,038	-		GFF3192	0.30	+1.2
9,038	-		GFF3192	0.30	-1.9
9,038	-		GFF3192	0.30	-0.3
9,108	+		GFF3192	0.35	-1.7
9,108	+		GFF3192	0.35	-0.4
9,328	+		GFF3192	0.53	-0.2
9,328	+		GFF3192	0.53	+0.0
9,339	+		GFF3192	0.54	+0.2
9,339	+		GFF3192	0.54	-0.4
9,340	-		GFF3192	0.54	+0.2
9,410	+		GFF3192	0.59	+0.2
9,410	+		GFF3192	0.59	+0.1
9,410	+		GFF3192	0.59	+0.1
9,411	-		GFF3192	0.59	-0.8
9,477	+		GFF3192	0.64	-0.1
9,478	-		GFF3192	0.64	-0.4
9,478	-		GFF3192	0.64	-0.3
9,478	-		GFF3192	0.64	+0.7
9,551	+		GFF3192	0.70	+0.7
9,579	+		GFF3192	0.72	+0.4
9,579	+		GFF3192	0.72	-1.3
9,579	+		GFF3192	0.72	-0.3
9,580	-		GFF3192	0.72	+1.8
9,580	-		GFF3192	0.72	-0.3
9,580	-		GFF3192	0.72	-2.3
9,580	-		GFF3192	0.72	+0.1
9,608	+		GFF3192	0.75	+0.2
9,608	+		GFF3192	0.75	+1.1
9,667	+		GFF3192	0.79	+0.0
9,692	-		GFF3192	0.81	+1.2
9,692	-		GFF3192	0.81	+0.1
9,780	+		GFF3192	0.88	+1.2
9,817	+				-0.8
9,817	+				+0.2
9,817	+				+0.5
9,817	+				-0.2
9,817	+				+1.0
9,817	+				-0.1
9,818	-				+0.0
9,818	-				-0.1
9,818	-				-0.8
9,818	-				+1.5
9,818	-				+0.0
9,818	-				-0.6
9,821	+				-0.6
9,821	+				+1.5
9,821	+				-0.8
9,821	+				-0.4
9,822	-				-0.7
9,822	-				+0.6
9,822	-				-1.5
9,822	-				+1.4
9,822	-				-0.4
9,822	-				-0.1
9,904	-				+0.6
9,904	-				-0.4
9,979	+				+0.4
9,980	-				-0.1
9,980	-				-1.3
10,054	+		GFF3193	0.10	-0.6
10,054	+		GFF3193	0.10	-0.8
10,054	+		GFF3193	0.10	+0.5
10,054	+		GFF3193	0.10	+0.3
10,075	+		GFF3193	0.13	-0.1
10,076	-		GFF3193	0.13	-1.2
10,141	+		GFF3193	0.22	+0.5
10,141	+		GFF3193	0.22	-0.9
10,142	-		GFF3193	0.22	-1.2
10,142	-		GFF3193	0.22	-0.6
10,142	-		GFF3193	0.22	+0.0
10,142	-		GFF3193	0.22	-0.6
10,163	+		GFF3193	0.25	+0.2
10,202	-		GFF3193	0.30	-0.5
10,246	+		GFF3193	0.36	-0.3
10,383	+		GFF3193	0.54	+1.2
10,383	+		GFF3193	0.54	-0.2
10,384	-		GFF3193	0.54	-0.7
10,415	-		GFF3193	0.59	-0.5
10,437	-		GFF3193	0.61	-0.8
10,437	-		GFF3193	0.61	-0.1
10,462	+		GFF3193	0.65	-0.8
10,463	-		GFF3193	0.65	-0.5
10,538	-		GFF3193	0.75	+0.0
10,538	-		GFF3193	0.75	-0.2
10,541	+		GFF3193	0.75	+3.2
10,541	+		GFF3193	0.75	-0.5
10,541	+		GFF3193	0.75	+0.1
10,542	-		GFF3193	0.76	-0.4
10,542	-		GFF3193	0.76	+0.4
10,542	-		GFF3193	0.76	+0.2
10,641	+		GFF3193	0.89	+0.6
10,641	+		GFF3193	0.89	-0.4
10,642	-		GFF3193	0.89	+0.6
10,642	-		GFF3193	0.89	-0.4
10,663	+				-0.6
10,669	+				-0.7
10,669	+				-0.6
10,669	+				-0.5
10,670	-				-2.2
10,746	+				+0.4
10,746	+				-0.5
10,746	+				-0.4
10,928	+				-0.3
10,929	-				-0.6