Strain Fitness in Variovorax sp. SCN45 around GFF3100

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3098 and GFF3099 are separated by 45 nucleotidesGFF3099 and GFF3100 are separated by 10 nucleotidesGFF3100 and GFF3101 are separated by 114 nucleotidesGFF3101 and GFF3102 are separated by 9 nucleotides GFF3098 - UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.3.1.98), at 527,550 to 528,602 GFF3098 GFF3099 - UPF0234 protein Yitk, at 528,648 to 529,133 GFF3099 GFF3100 - Aspartyl protease, at 529,144 to 529,788 GFF3100 GFF3101 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 529,903 to 530,256 GFF3101 GFF3102 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY (EC 2.3.1.n3), at 530,266 to 530,904 GFF3102 Position (kb) 529 530Strain fitness (log2 ratio) -2 -1 0 1 2at 529.118 kb on + strandat 529.567 kb on + strand, within GFF3100at 529.567 kb on + strand, within GFF3100at 529.567 kb on + strand, within GFF3100at 529.567 kb on + strand, within GFF3100at 529.567 kb on + strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.940 kb on + strand, within GFF3101at 529.941 kb on - strand, within GFF3101at 529.941 kb on - strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.057 kb on - strand, within GFF3101at 530.057 kb on - strand, within GFF3101at 530.186 kb on + strand, within GFF3101at 530.186 kb on + strand, within GFF3101at 530.186 kb on + strand, within GFF3101at 530.186 kb on + strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
remove
529,118 + +1.1
529,567 + GFF3100 0.66 -0.3
529,567 + GFF3100 0.66 +0.1
529,567 + GFF3100 0.66 +0.2
529,567 + GFF3100 0.66 -0.2
529,567 + GFF3100 0.66 +0.2
529,568 - GFF3100 0.66 -0.9
529,568 - GFF3100 0.66 +1.6
529,568 - GFF3100 0.66 -0.0
529,568 - GFF3100 0.66 -0.5
529,568 - GFF3100 0.66 -1.0
529,568 - GFF3100 0.66 +0.1
529,568 - GFF3100 0.66 +0.6
529,568 - GFF3100 0.66 -0.4
529,568 - GFF3100 0.66 +0.1
529,568 - GFF3100 0.66 -0.4
529,666 + GFF3100 0.81 +0.6
529,666 + GFF3100 0.81 +1.2
529,666 + GFF3100 0.81 -1.5
529,666 + GFF3100 0.81 +0.6
529,666 + GFF3100 0.81 +0.3
529,666 + GFF3100 0.81 -0.3
529,666 + GFF3100 0.81 +0.5
529,666 + GFF3100 0.81 -0.5
529,666 + GFF3100 0.81 -0.9
529,666 + GFF3100 0.81 +0.4
529,667 - GFF3100 0.81 -0.2
529,667 - GFF3100 0.81 -1.4
529,667 - GFF3100 0.81 +0.2
529,667 - GFF3100 0.81 +0.0
529,667 - GFF3100 0.81 -1.2
529,667 - GFF3100 0.81 +0.2
529,667 - GFF3100 0.81 +0.5
529,667 - GFF3100 0.81 -0.7
529,667 - GFF3100 0.81 -0.5
529,667 - GFF3100 0.81 +0.6
529,940 + GFF3101 0.10 -0.7
529,941 - GFF3101 0.11 -0.6
529,941 - GFF3101 0.11 +0.5
530,056 + GFF3101 0.43 -0.1
530,056 + GFF3101 0.43 +0.5
530,056 + GFF3101 0.43 -2.4
530,056 + GFF3101 0.43 +0.4
530,056 + GFF3101 0.43 +2.0
530,056 + GFF3101 0.43 +0.2
530,057 - GFF3101 0.44 -0.9
530,057 - GFF3101 0.44 -0.3
530,186 + GFF3101 0.80 +0.9
530,186 + GFF3101 0.80 -1.4
530,186 + GFF3101 0.80 -0.4
530,186 + GFF3101 0.80 -2.2
530,187 - GFF3101 0.80 -0.0
530,187 - GFF3101 0.80 -0.9
530,187 - GFF3101 0.80 +1.3
530,187 - GFF3101 0.80 -0.6
530,187 - GFF3101 0.80 -0.6
530,187 - GFF3101 0.80 -0.6
530,187 - GFF3101 0.80 -0.5
530,187 - GFF3101 0.80 +2.6
530,187 - GFF3101 0.80 -0.6
530,187 - GFF3101 0.80 +1.1
530,187 - GFF3101 0.80 +0.4
530,187 - GFF3101 0.80 -1.5

Or see this region's nucleotide sequence