Strain Fitness in Variovorax sp. SCN45 around GFF2951

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2950 and GFF2951 overlap by 4 nucleotidesGFF2951 and GFF2952 overlap by 32 nucleotidesGFF2952 and GFF2953 are separated by 20 nucleotides GFF2950 - Arsenite/antimonite:H+ antiporter ArsB, at 373,627 to 374,919 GFF2950 GFF2951 - Arsenate reductase (EC 1.20.4.1) glutaredoxin-coupled, glutaredoxin-like family, at 374,916 to 375,350 GFF2951 GFF2952 - Arsenic resistance protein ArsH, at 375,319 to 376,053 GFF2952 GFF2953 - Transcriptional regulator, AraC family, at 376,074 to 377,039 GFF2953 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1 2at 374.149 kb on + strand, within GFF2950at 374.149 kb on + strand, within GFF2950at 374.149 kb on + strand, within GFF2950at 374.215 kb on + strand, within GFF2950at 374.215 kb on + strand, within GFF2950at 374.216 kb on - strand, within GFF2950at 374.242 kb on + strand, within GFF2950at 374.243 kb on - strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.506 kb on + strand, within GFF2950at 374.506 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.830 kb on + strandat 374.830 kb on + strandat 374.831 kb on - strandat 374.831 kb on - strandat 374.937 kb on + strandat 374.937 kb on + strandat 374.937 kb on + strandat 374.938 kb on - strandat 374.938 kb on - strandat 374.938 kb on - strandat 375.018 kb on + strand, within GFF2951at 375.018 kb on + strand, within GFF2951at 375.018 kb on + strand, within GFF2951at 375.114 kb on + strand, within GFF2951at 375.115 kb on - strand, within GFF2951at 375.448 kb on + strand, within GFF2952at 375.448 kb on + strand, within GFF2952at 375.448 kb on + strand, within GFF2952at 375.449 kb on - strand, within GFF2952at 375.472 kb on + strand, within GFF2952at 375.472 kb on + strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.905 kb on - strand, within GFF2952at 375.905 kb on - strand, within GFF2952at 375.907 kb on + strand, within GFF2952at 375.907 kb on + strand, within GFF2952at 375.908 kb on - strand, within GFF2952at 375.908 kb on - strand, within GFF2952at 375.976 kb on + strand, within GFF2952at 375.976 kb on + strand, within GFF2952

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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374,149 + GFF2950 0.40 +0.6
374,149 + GFF2950 0.40 -2.3
374,149 + GFF2950 0.40 -0.9
374,215 + GFF2950 0.45 +0.2
374,215 + GFF2950 0.45 -0.2
374,216 - GFF2950 0.46 -0.5
374,242 + GFF2950 0.48 +0.5
374,243 - GFF2950 0.48 -0.1
374,494 + GFF2950 0.67 +0.6
374,494 + GFF2950 0.67 +1.1
374,494 + GFF2950 0.67 +2.0
374,494 + GFF2950 0.67 +1.6
374,494 + GFF2950 0.67 -0.9
374,494 + GFF2950 0.67 -1.2
374,494 + GFF2950 0.67 -0.5
374,494 + GFF2950 0.67 +0.2
374,494 + GFF2950 0.67 +0.1
374,494 + GFF2950 0.67 +0.1
374,494 + GFF2950 0.67 -0.3
374,494 + GFF2950 0.67 +0.1
374,495 - GFF2950 0.67 -0.7
374,495 - GFF2950 0.67 -0.5
374,495 - GFF2950 0.67 -1.2
374,495 - GFF2950 0.67 -0.2
374,495 - GFF2950 0.67 +2.2
374,495 - GFF2950 0.67 +0.1
374,506 + GFF2950 0.68 +1.6
374,506 + GFF2950 0.68 +0.2
374,713 + GFF2950 0.84 -1.2
374,713 + GFF2950 0.84 -1.8
374,713 + GFF2950 0.84 +0.8
374,713 + GFF2950 0.84 -1.8
374,713 + GFF2950 0.84 -0.0
374,713 + GFF2950 0.84 -1.6
374,830 + +0.1
374,830 + +0.1
374,831 - -0.5
374,831 - -0.0
374,937 + -0.9
374,937 + -0.5
374,937 + -0.9
374,938 - -0.3
374,938 - +0.6
374,938 - -0.4
375,018 + GFF2951 0.23 -1.1
375,018 + GFF2951 0.23 -1.4
375,018 + GFF2951 0.23 -0.7
375,114 + GFF2951 0.46 -0.4
375,115 - GFF2951 0.46 -1.8
375,448 + GFF2952 0.18 -0.3
375,448 + GFF2952 0.18 -0.9
375,448 + GFF2952 0.18 -1.6
375,449 - GFF2952 0.18 +0.3
375,472 + GFF2952 0.21 -1.2
375,472 + GFF2952 0.21 +1.1
375,473 - GFF2952 0.21 +0.9
375,473 - GFF2952 0.21 +0.4
375,473 - GFF2952 0.21 +0.1
375,538 + GFF2952 0.30 -0.3
375,538 + GFF2952 0.30 -2.1
375,538 + GFF2952 0.30 +0.4
375,539 - GFF2952 0.30 -1.1
375,539 - GFF2952 0.30 -2.3
375,539 - GFF2952 0.30 +0.1
375,539 - GFF2952 0.30 +0.6
375,539 - GFF2952 0.30 -0.3
375,539 - GFF2952 0.30 -0.0
375,539 - GFF2952 0.30 -2.4
375,905 - GFF2952 0.80 +1.2
375,905 - GFF2952 0.80 -1.4
375,907 + GFF2952 0.80 +0.2
375,907 + GFF2952 0.80 +0.1
375,908 - GFF2952 0.80 +0.9
375,908 - GFF2952 0.80 +0.3
375,976 + GFF2952 0.89 -0.2
375,976 + GFF2952 0.89 -1.5

Or see this region's nucleotide sequence