Strain Fitness in Variovorax sp. SCN45 around GFF2853

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2852 and GFF2853 are separated by 184 nucleotidesGFF2853 and GFF2854 are separated by 220 nucleotides GFF2852 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 274,774 to 276,696 GFF2852 GFF2853 - DNA-binding protein HU-beta, at 276,881 to 277,153 GFF2853 GFF2854 - D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83), at 277,374 to 278,459 GFF2854 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.936 kb on + strand, within GFF2852at 275.937 kb on - strand, within GFF2852at 275.937 kb on - strand, within GFF2852at 275.937 kb on - strand, within GFF2852at 275.937 kb on - strand, within GFF2852at 275.937 kb on - strand, within GFF2852at 275.937 kb on - strand, within GFF2852at 275.939 kb on + strand, within GFF2852at 275.939 kb on + strand, within GFF2852at 275.939 kb on + strand, within GFF2852at 275.939 kb on + strand, within GFF2852at 275.939 kb on + strand, within GFF2852at 275.939 kb on + strand, within GFF2852at 275.939 kb on + strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 275.940 kb on - strand, within GFF2852at 276.005 kb on + strand, within GFF2852at 276.005 kb on + strand, within GFF2852at 276.006 kb on - strand, within GFF2852at 276.006 kb on - strand, within GFF2852at 276.006 kb on - strand, within GFF2852at 276.056 kb on + strand, within GFF2852at 276.056 kb on + strand, within GFF2852at 276.056 kb on + strand, within GFF2852at 276.056 kb on + strand, within GFF2852at 276.056 kb on + strand, within GFF2852at 276.056 kb on + strand, within GFF2852at 276.056 kb on + strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.057 kb on - strand, within GFF2852at 276.059 kb on + strand, within GFF2852at 276.059 kb on + strand, within GFF2852at 276.060 kb on - strand, within GFF2852at 276.060 kb on - strand, within GFF2852at 276.146 kb on + strand, within GFF2852at 276.146 kb on + strand, within GFF2852at 276.146 kb on + strand, within GFF2852at 276.146 kb on + strand, within GFF2852at 276.146 kb on + strand, within GFF2852at 276.147 kb on - strand, within GFF2852at 276.147 kb on - strand, within GFF2852at 276.147 kb on - strand, within GFF2852at 276.147 kb on - strand, within GFF2852at 276.254 kb on + strand, within GFF2852at 276.255 kb on - strand, within GFF2852at 276.255 kb on - strand, within GFF2852at 276.255 kb on - strand, within GFF2852at 276.255 kb on - strand, within GFF2852at 276.255 kb on - strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.446 kb on + strand, within GFF2852at 276.446 kb on + strand, within GFF2852at 276.447 kb on - strand, within GFF2852at 276.447 kb on - strand, within GFF2852at 276.447 kb on - strand, within GFF2852at 276.447 kb on - strand, within GFF2852at 276.603 kb on - strandat 276.603 kb on - strandat 276.734 kb on + strandat 276.734 kb on + strandat 276.874 kb on + strandat 276.874 kb on + strandat 276.874 kb on + strandat 276.875 kb on - strandat 276.875 kb on - strandat 276.882 kb on + strandat 276.882 kb on + strandat 276.882 kb on + strandat 276.882 kb on + strandat 276.882 kb on + strandat 276.883 kb on - strandat 276.883 kb on - strandat 276.947 kb on - strand, within GFF2853at 276.998 kb on + strand, within GFF2853at 276.999 kb on - strand, within GFF2853at 276.999 kb on - strand, within GFF2853at 276.999 kb on - strand, within GFF2853at 277.054 kb on + strand, within GFF2853at 277.054 kb on + strand, within GFF2853at 277.055 kb on - strand, within GFF2853at 277.167 kb on - strandat 277.167 kb on - strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.299 kb on + strandat 277.299 kb on + strandat 277.299 kb on + strandat 277.300 kb on - strandat 277.300 kb on - strandat 277.300 kb on - strandat 277.340 kb on - strandat 277.340 kb on - strandat 277.811 kb on - strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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275,936 + GFF2852 0.60 -0.2
275,936 + GFF2852 0.60 -0.3
275,936 + GFF2852 0.60 +0.7
275,936 + GFF2852 0.60 -0.8
275,936 + GFF2852 0.60 -0.2
275,936 + GFF2852 0.60 +0.8
275,936 + GFF2852 0.60 -1.3
275,936 + GFF2852 0.60 -1.3
275,936 + GFF2852 0.60 -1.3
275,936 + GFF2852 0.60 -1.0
275,937 - GFF2852 0.60 +0.5
275,937 - GFF2852 0.60 -0.9
275,937 - GFF2852 0.60 -1.4
275,937 - GFF2852 0.60 -1.1
275,937 - GFF2852 0.60 -1.4
275,937 - GFF2852 0.60 +0.5
275,939 + GFF2852 0.61 -0.4
275,939 + GFF2852 0.61 +0.6
275,939 + GFF2852 0.61 +1.9
275,939 + GFF2852 0.61 -0.0
275,939 + GFF2852 0.61 -0.2
275,939 + GFF2852 0.61 -1.4
275,939 + GFF2852 0.61 -0.1
275,940 - GFF2852 0.61 +0.6
275,940 - GFF2852 0.61 -0.3
275,940 - GFF2852 0.61 +1.4
275,940 - GFF2852 0.61 +0.1
275,940 - GFF2852 0.61 +1.3
275,940 - GFF2852 0.61 +0.4
275,940 - GFF2852 0.61 +0.4
275,940 - GFF2852 0.61 +0.1
275,940 - GFF2852 0.61 +0.6
275,940 - GFF2852 0.61 +0.3
275,940 - GFF2852 0.61 -0.3
276,005 + GFF2852 0.64 +0.6
276,005 + GFF2852 0.64 -0.4
276,006 - GFF2852 0.64 -0.4
276,006 - GFF2852 0.64 -2.6
276,006 - GFF2852 0.64 +0.2
276,056 + GFF2852 0.67 +0.0
276,056 + GFF2852 0.67 -0.2
276,056 + GFF2852 0.67 -0.9
276,056 + GFF2852 0.67 -0.4
276,056 + GFF2852 0.67 -1.1
276,056 + GFF2852 0.67 -0.1
276,056 + GFF2852 0.67 -0.6
276,057 - GFF2852 0.67 -1.0
276,057 - GFF2852 0.67 +0.2
276,057 - GFF2852 0.67 -0.8
276,057 - GFF2852 0.67 -0.1
276,057 - GFF2852 0.67 -0.2
276,057 - GFF2852 0.67 +0.4
276,057 - GFF2852 0.67 -1.2
276,057 - GFF2852 0.67 +1.0
276,057 - GFF2852 0.67 +0.4
276,057 - GFF2852 0.67 +0.5
276,059 + GFF2852 0.67 -0.3
276,059 + GFF2852 0.67 -1.0
276,060 - GFF2852 0.67 -1.2
276,060 - GFF2852 0.67 -0.1
276,146 + GFF2852 0.71 -1.1
276,146 + GFF2852 0.71 +0.6
276,146 + GFF2852 0.71 -0.4
276,146 + GFF2852 0.71 -0.4
276,146 + GFF2852 0.71 -0.7
276,147 - GFF2852 0.71 -0.6
276,147 - GFF2852 0.71 -0.4
276,147 - GFF2852 0.71 -0.3
276,147 - GFF2852 0.71 +0.7
276,254 + GFF2852 0.77 -0.2
276,255 - GFF2852 0.77 +0.8
276,255 - GFF2852 0.77 -0.3
276,255 - GFF2852 0.77 -0.2
276,255 - GFF2852 0.77 +0.4
276,255 - GFF2852 0.77 -0.8
276,429 + GFF2852 0.86 +0.9
276,429 + GFF2852 0.86 +1.2
276,429 + GFF2852 0.86 -1.9
276,429 + GFF2852 0.86 -0.6
276,429 + GFF2852 0.86 -0.2
276,429 + GFF2852 0.86 -0.9
276,430 - GFF2852 0.86 +0.1
276,430 - GFF2852 0.86 -0.4
276,430 - GFF2852 0.86 -0.3
276,430 - GFF2852 0.86 -0.6
276,430 - GFF2852 0.86 -0.0
276,430 - GFF2852 0.86 +1.2
276,430 - GFF2852 0.86 +0.4
276,446 + GFF2852 0.87 -2.6
276,446 + GFF2852 0.87 -0.2
276,447 - GFF2852 0.87 +0.8
276,447 - GFF2852 0.87 +0.8
276,447 - GFF2852 0.87 +2.2
276,447 - GFF2852 0.87 -1.2
276,603 - -0.8
276,603 - -1.0
276,734 + -0.3
276,734 + -0.9
276,874 + -0.1
276,874 + -0.3
276,874 + +0.6
276,875 - +0.6
276,875 - -0.3
276,882 + +0.2
276,882 + +0.6
276,882 + +1.0
276,882 + -1.2
276,882 + -1.9
276,883 - -0.2
276,883 - -2.1
276,947 - GFF2853 0.24 -1.0
276,998 + GFF2853 0.43 -0.5
276,999 - GFF2853 0.43 -2.2
276,999 - GFF2853 0.43 +0.0
276,999 - GFF2853 0.43 -1.2
277,054 + GFF2853 0.63 -1.4
277,054 + GFF2853 0.63 -0.4
277,055 - GFF2853 0.64 -1.5
277,167 - -0.0
277,167 - +0.7
277,272 + -0.2
277,272 + -0.7
277,272 + -0.6
277,272 + +0.1
277,272 + -1.0
277,272 + -1.1
277,273 - +0.1
277,273 - -0.3
277,273 - +0.0
277,273 - -0.5
277,273 - +0.1
277,273 - +0.7
277,273 - -0.7
277,273 - -0.1
277,273 - -0.0
277,273 - -0.0
277,273 - -1.3
277,299 + -1.0
277,299 + +1.2
277,299 + -0.9
277,300 - +1.3
277,300 - -1.2
277,300 - +1.6
277,340 - -1.6
277,340 - -0.5
277,811 - GFF2854 0.40 +0.5
278,005 + GFF2854 0.58 +0.4
278,005 + GFF2854 0.58 +0.0
278,005 + GFF2854 0.58 +0.2
278,005 + GFF2854 0.58 -1.4
278,005 + GFF2854 0.58 +0.2
278,005 + GFF2854 0.58 +0.0
278,005 + GFF2854 0.58 +0.1
278,006 - GFF2854 0.58 +0.1
278,006 - GFF2854 0.58 -0.2
278,006 - GFF2854 0.58 +0.6
278,006 - GFF2854 0.58 -0.2
278,006 - GFF2854 0.58 -1.8
278,006 - GFF2854 0.58 -1.1
278,006 - GFF2854 0.58 +0.6
278,029 + GFF2854 0.60 +0.6
278,029 + GFF2854 0.60 -1.3
278,029 + GFF2854 0.60 -0.1
278,030 - GFF2854 0.60 -0.7
278,030 - GFF2854 0.60 -0.7
278,030 - GFF2854 0.60 -0.5
278,059 + GFF2854 0.63 -0.7
278,059 + GFF2854 0.63 +0.0
278,059 + GFF2854 0.63 +1.0
278,059 + GFF2854 0.63 +0.4
278,059 + GFF2854 0.63 -0.1
278,059 + GFF2854 0.63 -0.1
278,059 + GFF2854 0.63 -0.1
278,059 + GFF2854 0.63 +0.9
278,059 + GFF2854 0.63 -0.3
278,059 + GFF2854 0.63 -0.2
278,059 + GFF2854 0.63 +1.5
278,059 + GFF2854 0.63 -1.2
278,059 + GFF2854 0.63 +0.3
278,059 + GFF2854 0.63 +0.4
278,059 + GFF2854 0.63 +0.5
278,059 + GFF2854 0.63 -1.1
278,059 + GFF2854 0.63 -0.4
278,059 + GFF2854 0.63 -0.9
278,059 + GFF2854 0.63 -0.2
278,059 + GFF2854 0.63 -0.2
278,059 + GFF2854 0.63 -0.8
278,059 + GFF2854 0.63 -0.7
278,059 + GFF2854 0.63 +0.2
278,059 + GFF2854 0.63 -0.1
278,059 + GFF2854 0.63 -1.2
278,059 + GFF2854 0.63 -0.6
278,059 + GFF2854 0.63 -1.6
278,059 + GFF2854 0.63 -0.0
278,059 + GFF2854 0.63 -2.4
278,059 + GFF2854 0.63 -0.7
278,059 + GFF2854 0.63 -0.4
278,059 + GFF2854 0.63 -0.9
278,060 - GFF2854 0.63 -0.4
278,060 - GFF2854 0.63 +0.3
278,060 - GFF2854 0.63 -1.1
278,060 - GFF2854 0.63 -1.4
278,060 - GFF2854 0.63 -1.0
278,060 - GFF2854 0.63 -0.3
278,060 - GFF2854 0.63 -1.6
278,060 - GFF2854 0.63 +0.4
278,060 - GFF2854 0.63 +0.6
278,060 - GFF2854 0.63 -0.4
278,060 - GFF2854 0.63 -0.5
278,060 - GFF2854 0.63 -0.2
278,060 - GFF2854 0.63 -0.6
278,060 - GFF2854 0.63 +1.4
278,060 - GFF2854 0.63 +0.7
278,060 - GFF2854 0.63 -0.3
278,060 - GFF2854 0.63 +0.6
278,060 - GFF2854 0.63 -2.0
278,060 - GFF2854 0.63 -1.0
278,060 - GFF2854 0.63 -0.3
278,060 - GFF2854 0.63 -0.7
278,060 - GFF2854 0.63 +1.6

Or see this region's nucleotide sequence