Strain Fitness in Variovorax sp. SCN45 around GFF2776

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2775 and GFF2776 are separated by 21 nucleotidesGFF2776 and GFF2777 are separated by 103 nucleotidesGFF2777 and GFF2778 are separated by 40 nucleotides GFF2775 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 205,009 to 206,463 GFF2775 GFF2776 - hypothetical protein, at 206,485 to 207,528 GFF2776 GFF2777 - Uncharacterized UPF0721 integral membrane protein, at 207,632 to 208,384 GFF2777 GFF2778 - Fosmidomycin resistance protein, at 208,425 to 209,678 GFF2778 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 205.796 kb on + strand, within GFF2775at 205.796 kb on + strand, within GFF2775at 205.796 kb on + strand, within GFF2775at 205.797 kb on - strand, within GFF2775at 205.797 kb on - strand, within GFF2775at 205.853 kb on + strand, within GFF2775at 205.853 kb on + strand, within GFF2775at 205.854 kb on - strand, within GFF2775at 205.854 kb on - strand, within GFF2775at 205.889 kb on + strand, within GFF2775at 206.201 kb on + strand, within GFF2775at 206.201 kb on + strand, within GFF2775at 206.201 kb on + strand, within GFF2775at 206.201 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.285 kb on + strand, within GFF2775at 206.286 kb on - strand, within GFF2775at 206.309 kb on + strand, within GFF2775at 206.310 kb on - strand, within GFF2775at 206.310 kb on - strand, within GFF2775at 206.390 kb on + strandat 206.390 kb on + strandat 206.390 kb on + strandat 206.390 kb on + strandat 206.391 kb on - strandat 206.408 kb on + strandat 206.408 kb on + strandat 206.409 kb on - strandat 206.409 kb on - strandat 206.531 kb on + strandat 206.531 kb on + strandat 206.531 kb on + strandat 206.532 kb on - strandat 206.532 kb on - strandat 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.763 kb on - strand, within GFF2776at 206.802 kb on - strand, within GFF2776at 206.810 kb on + strand, within GFF2776at 206.811 kb on - strand, within GFF2776at 206.915 kb on + strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.381 kb on - strand, within GFF2776at 207.408 kb on - strand, within GFF2776at 207.408 kb on - strand, within GFF2776at 207.464 kb on + strandat 207.464 kb on + strandat 207.464 kb on + strandat 207.465 kb on - strandat 207.465 kb on - strandat 207.465 kb on - strandat 207.465 kb on - strandat 207.557 kb on + strandat 207.557 kb on + strandat 207.557 kb on + strandat 207.557 kb on + strandat 207.557 kb on + strandat 207.558 kb on - strandat 207.558 kb on - strandat 207.741 kb on + strand, within GFF2777at 207.741 kb on + strand, within GFF2777at 207.741 kb on + strand, within GFF2777at 207.742 kb on - strand, within GFF2777at 207.742 kb on - strand, within GFF2777at 207.742 kb on - strand, within GFF2777at 207.742 kb on - strand, within GFF2777at 207.918 kb on - strand, within GFF2777at 207.918 kb on - strand, within GFF2777at 207.918 kb on - strand, within GFF2777at 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.397 kb on - strandat 208.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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205,796 + GFF2775 0.54 -0.2
205,796 + GFF2775 0.54 -0.7
205,796 + GFF2775 0.54 -1.3
205,797 - GFF2775 0.54 +0.4
205,797 - GFF2775 0.54 -1.9
205,853 + GFF2775 0.58 +1.0
205,853 + GFF2775 0.58 -0.9
205,854 - GFF2775 0.58 +0.2
205,854 - GFF2775 0.58 -0.9
205,889 + GFF2775 0.60 +0.3
206,201 + GFF2775 0.82 +0.1
206,201 + GFF2775 0.82 +0.5
206,201 + GFF2775 0.82 -0.0
206,201 + GFF2775 0.82 -0.1
206,264 + GFF2775 0.86 -0.4
206,264 + GFF2775 0.86 +0.1
206,264 + GFF2775 0.86 -0.2
206,264 + GFF2775 0.86 -0.8
206,264 + GFF2775 0.86 -0.9
206,264 + GFF2775 0.86 +1.6
206,264 + GFF2775 0.86 +1.1
206,264 + GFF2775 0.86 +0.4
206,264 + GFF2775 0.86 -0.1
206,264 + GFF2775 0.86 -0.7
206,264 + GFF2775 0.86 -0.8
206,265 - GFF2775 0.86 +0.3
206,265 - GFF2775 0.86 +0.0
206,265 - GFF2775 0.86 -1.3
206,265 - GFF2775 0.86 +2.0
206,265 - GFF2775 0.86 +1.3
206,265 - GFF2775 0.86 +0.6
206,265 - GFF2775 0.86 +0.5
206,265 - GFF2775 0.86 -0.1
206,265 - GFF2775 0.86 -0.4
206,265 - GFF2775 0.86 -0.3
206,285 + GFF2775 0.88 +0.5
206,286 - GFF2775 0.88 -0.2
206,309 + GFF2775 0.89 -1.6
206,310 - GFF2775 0.89 -0.4
206,310 - GFF2775 0.89 +1.3
206,390 + -0.3
206,390 + +0.2
206,390 + -0.1
206,390 + -0.2
206,391 - -0.6
206,408 + -0.4
206,408 + -0.7
206,409 - -0.6
206,409 - +0.6
206,531 + +0.3
206,531 + +0.1
206,531 + +0.2
206,532 - +0.6
206,532 - +0.0
206,762 + GFF2776 0.27 -0.1
206,762 + GFF2776 0.27 -1.2
206,762 + GFF2776 0.27 -0.2
206,762 + GFF2776 0.27 -0.6
206,762 + GFF2776 0.27 -0.4
206,763 - GFF2776 0.27 +0.0
206,802 - GFF2776 0.30 -0.3
206,810 + GFF2776 0.31 +0.7
206,811 - GFF2776 0.31 +0.4
206,915 + GFF2776 0.41 -0.5
206,916 - GFF2776 0.41 -1.4
206,916 - GFF2776 0.41 +0.9
206,916 - GFF2776 0.41 +0.0
206,916 - GFF2776 0.41 -0.1
206,916 - GFF2776 0.41 +0.0
206,916 - GFF2776 0.41 +0.1
207,132 - GFF2776 0.62 -1.0
207,132 - GFF2776 0.62 +1.5
207,132 - GFF2776 0.62 -0.2
207,132 - GFF2776 0.62 +1.1
207,381 - GFF2776 0.86 +0.3
207,408 - GFF2776 0.88 -0.3
207,408 - GFF2776 0.88 -0.3
207,464 + +0.8
207,464 + -0.4
207,464 + +0.4
207,465 - +0.4
207,465 - -1.0
207,465 - -0.2
207,465 - +0.4
207,557 + +0.2
207,557 + -0.4
207,557 + +0.1
207,557 + -0.7
207,557 + -1.3
207,558 - +0.5
207,558 - -0.9
207,741 + GFF2777 0.14 -0.1
207,741 + GFF2777 0.14 -0.0
207,741 + GFF2777 0.14 -0.2
207,742 - GFF2777 0.15 +0.6
207,742 - GFF2777 0.15 -1.3
207,742 - GFF2777 0.15 -1.8
207,742 - GFF2777 0.15 +0.0
207,918 - GFF2777 0.38 -0.4
207,918 - GFF2777 0.38 -2.1
207,918 - GFF2777 0.38 +1.0
208,371 + -0.3
208,371 + +0.1
208,371 + -0.0
208,371 + +0.4
208,371 + -2.7
208,371 + -1.1
208,371 + +0.3
208,371 + -0.3
208,371 + -0.1
208,371 + -0.7
208,371 + +0.0
208,371 + +0.0
208,371 + +0.6
208,371 + -0.7
208,371 + -0.4
208,371 + -0.2
208,371 + -1.4
208,371 + +0.1
208,371 + +0.3
208,371 + +0.0
208,371 + -1.2
208,372 - +0.6
208,372 - -0.4
208,372 - +0.4
208,372 - -1.1
208,372 - -0.4
208,372 - -0.2
208,372 - -0.8
208,372 - -0.4
208,372 - -0.3
208,372 - +1.1
208,372 - +0.6
208,372 - -0.7
208,372 - -0.2
208,372 - -0.4
208,372 - -0.4
208,372 - -0.2
208,372 - +0.9
208,372 - -0.4
208,372 - -0.2
208,372 - +0.2
208,372 - +0.6
208,372 - +0.0
208,372 - +0.0
208,397 - -0.2
208,399 - -0.9

Or see this region's nucleotide sequence