Strain Fitness in Variovorax sp. SCN45 around GFF271

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF270 and GFF271 are separated by 70 nucleotidesGFF271 and GFF272 overlap by 4 nucleotidesGFF272 and GFF273 are separated by 108 nucleotides GFF270 - 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117), at 304,528 to 307,146 GFF270 GFF271 - 2-methylcitrate synthase (EC 2.3.3.5), at 307,217 to 308,380 GFF271 GFF272 - thioesterase superfamily protein, at 308,377 to 308,817 GFF272 GFF273 - Transcriptional regulator, Xre family, at 308,926 to 310,347 GFF273 Position (kb) 307 308 309Strain fitness (log2 ratio) -3 -2 -1 0 1at 306.332 kb on + strand, within GFF270at 306.332 kb on + strand, within GFF270at 306.332 kb on + strand, within GFF270at 306.332 kb on + strand, within GFF270at 306.333 kb on - strand, within GFF270at 307.040 kb on + strandat 307.040 kb on + strandat 307.041 kb on - strandat 307.041 kb on - strandat 307.041 kb on - strandat 307.041 kb on - strandat 307.041 kb on - strandat 307.041 kb on - strandat 307.041 kb on - strandat 307.042 kb on - strandat 307.100 kb on + strandat 307.100 kb on + strandat 307.100 kb on + strandat 307.100 kb on + strandat 307.101 kb on - strandat 307.101 kb on - strandat 307.101 kb on - strandat 307.101 kb on - strandat 307.140 kb on + strandat 307.141 kb on - strandat 307.218 kb on + strandat 307.266 kb on + strandat 307.266 kb on + strandat 307.266 kb on + strandat 307.266 kb on + strandat 307.266 kb on + strandat 307.267 kb on - strandat 307.267 kb on - strandat 307.267 kb on - strandat 307.267 kb on - strandat 307.267 kb on - strandat 307.267 kb on - strandat 307.267 kb on - strandat 307.316 kb on - strandat 307.392 kb on + strand, within GFF271at 307.392 kb on + strand, within GFF271at 307.392 kb on + strand, within GFF271at 307.392 kb on + strand, within GFF271at 307.392 kb on + strand, within GFF271at 307.393 kb on - strand, within GFF271at 307.393 kb on - strand, within GFF271at 307.393 kb on - strand, within GFF271at 307.482 kb on + strand, within GFF271at 307.557 kb on + strand, within GFF271at 307.557 kb on + strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.642 kb on - strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.797 kb on + strand, within GFF271at 307.798 kb on - strand, within GFF271at 307.936 kb on - strand, within GFF271at 307.936 kb on - strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.194 kb on + strand, within GFF271at 308.257 kb on - strand, within GFF271at 308.257 kb on - strand, within GFF271at 308.414 kb on + strandat 308.415 kb on - strandat 308.415 kb on - strandat 308.723 kb on + strand, within GFF272at 308.723 kb on + strand, within GFF272at 308.822 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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306,332 + GFF270 0.69 -2.0
306,332 + GFF270 0.69 -3.0
306,332 + GFF270 0.69 -3.0
306,332 + GFF270 0.69 -1.1
306,333 - GFF270 0.69 -2.8
307,040 + -2.8
307,040 + -2.3
307,041 - -1.5
307,041 - -0.3
307,041 - -1.8
307,041 - -1.5
307,041 - -1.7
307,041 - -2.1
307,041 - -1.3
307,042 - -2.7
307,100 + -1.1
307,100 + -1.8
307,100 + -1.9
307,100 + -1.8
307,101 - -1.5
307,101 - -3.0
307,101 - -0.9
307,101 - -1.8
307,140 + +0.1
307,141 - -2.3
307,218 + +0.2
307,266 + -2.2
307,266 + -0.3
307,266 + -2.7
307,266 + -0.3
307,266 + -3.1
307,267 - -2.0
307,267 - -1.9
307,267 - -1.7
307,267 - -1.3
307,267 - -2.5
307,267 - -0.8
307,267 - -0.8
307,316 - -0.4
307,392 + GFF271 0.15 -1.9
307,392 + GFF271 0.15 +0.2
307,392 + GFF271 0.15 -0.4
307,392 + GFF271 0.15 -2.8
307,392 + GFF271 0.15 -1.5
307,393 - GFF271 0.15 -1.7
307,393 - GFF271 0.15 -0.3
307,393 - GFF271 0.15 -1.0
307,482 + GFF271 0.23 -0.9
307,557 + GFF271 0.29 -1.4
307,557 + GFF271 0.29 -1.2
307,558 - GFF271 0.29 +0.3
307,558 - GFF271 0.29 -2.1
307,558 - GFF271 0.29 -1.0
307,558 - GFF271 0.29 -0.7
307,558 - GFF271 0.29 -3.2
307,642 - GFF271 0.37 -2.6
307,728 + GFF271 0.44 -0.1
307,728 + GFF271 0.44 -1.5
307,728 + GFF271 0.44 -1.0
307,728 + GFF271 0.44 -1.5
307,728 + GFF271 0.44 -2.6
307,728 + GFF271 0.44 -2.2
307,728 + GFF271 0.44 +0.5
307,728 + GFF271 0.44 -1.1
307,728 + GFF271 0.44 -1.3
307,728 + GFF271 0.44 -2.3
307,729 - GFF271 0.44 -1.0
307,729 - GFF271 0.44 +0.0
307,729 - GFF271 0.44 -1.1
307,729 - GFF271 0.44 -0.8
307,729 - GFF271 0.44 +0.0
307,729 - GFF271 0.44 -0.3
307,729 - GFF271 0.44 +1.3
307,729 - GFF271 0.44 -1.0
307,729 - GFF271 0.44 -1.6
307,729 - GFF271 0.44 -2.2
307,729 - GFF271 0.44 -0.3
307,729 - GFF271 0.44 +0.7
307,729 - GFF271 0.44 +0.0
307,729 - GFF271 0.44 -2.0
307,797 + GFF271 0.50 -1.5
307,798 - GFF271 0.50 -1.3
307,936 - GFF271 0.62 -2.0
307,936 - GFF271 0.62 -1.3
307,941 + GFF271 0.62 -1.5
307,941 + GFF271 0.62 -1.3
307,941 + GFF271 0.62 -1.3
307,941 + GFF271 0.62 -1.5
307,941 + GFF271 0.62 +0.7
307,942 - GFF271 0.62 -1.8
307,942 - GFF271 0.62 +0.2
307,942 - GFF271 0.62 -0.7
307,942 - GFF271 0.62 +0.2
307,942 - GFF271 0.62 -0.7
307,942 - GFF271 0.62 -1.1
307,942 - GFF271 0.62 -0.7
308,151 + GFF271 0.80 -1.8
308,151 + GFF271 0.80 +1.3
308,151 + GFF271 0.80 -0.8
308,151 + GFF271 0.80 -1.5
308,152 - GFF271 0.80 -0.7
308,152 - GFF271 0.80 -2.6
308,152 - GFF271 0.80 -0.8
308,152 - GFF271 0.80 -0.4
308,152 - GFF271 0.80 -3.2
308,152 - GFF271 0.80 -1.5
308,194 + GFF271 0.84 -1.0
308,257 - GFF271 0.89 -0.6
308,257 - GFF271 0.89 -1.2
308,414 + -0.8
308,415 - -0.8
308,415 - -0.7
308,723 + GFF272 0.78 -1.4
308,723 + GFF272 0.78 -0.1
308,822 + -0.1
309,025 + -1.0
309,025 + -1.7
309,025 + +0.5
309,025 + -0.3
309,026 - -1.0
309,026 - -1.8
309,026 - -2.6
309,026 - -2.0
309,026 - -1.3

Or see this region's nucleotide sequence