Strain Fitness in Variovorax sp. SCN45 around GFF2612

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
16,199	+		GFF2611	0.29	-0.4
16,199	+		GFF2611	0.29	-0.9
16,199	+		GFF2611	0.29	-0.6
16,199	+		GFF2611	0.29	-0.1
16,199	+		GFF2611	0.29	-0.4
16,200	-		GFF2611	0.29	-1.3
16,200	-		GFF2611	0.29	-0.1
16,200	-		GFF2611	0.29	+0.8
16,200	-		GFF2611	0.29	-0.1
16,200	-		GFF2611	0.29	-0.1
16,200	-		GFF2611	0.29	-0.2
16,232	+		GFF2611	0.32	+0.7
16,232	+		GFF2611	0.32	-0.4
16,232	+		GFF2611	0.32	-1.3
16,232	+		GFF2611	0.32	-0.7
16,233	-		GFF2611	0.32	-0.6
16,233	-		GFF2611	0.32	-0.4
16,233	-		GFF2611	0.32	+0.0
16,233	-		GFF2611	0.32	-1.6
16,304	+		GFF2611	0.39	-0.8
16,304	+		GFF2611	0.39	+0.2
16,304	+		GFF2611	0.39	-1.0
16,304	+		GFF2611	0.39	+0.0
16,304	+		GFF2611	0.39	+0.1
16,304	+		GFF2611	0.39	+0.3
16,305	-		GFF2611	0.39	-0.5
16,305	-		GFF2611	0.39	+0.4
16,305	-		GFF2611	0.39	+0.4
16,305	-		GFF2611	0.39	+1.0
16,305	-		GFF2611	0.39	-0.7
16,305	-		GFF2611	0.39	-0.3
16,485	-		GFF2611	0.57	+1.3
16,511	+		GFF2611	0.60	-1.7
16,511	+		GFF2611	0.60	-0.3
16,511	+		GFF2611	0.60	-2.3
16,511	+		GFF2611	0.60	-0.8
16,511	+		GFF2611	0.60	+1.0
16,512	-		GFF2611	0.60	+2.2
16,512	-		GFF2611	0.60	+1.0
16,512	-		GFF2611	0.60	+1.6
16,512	-		GFF2611	0.60	-0.4
16,512	-		GFF2611	0.60	-0.7
16,512	-		GFF2611	0.60	-0.9
16,512	-		GFF2611	0.60	-2.0
16,512	-		GFF2611	0.60	-0.7
16,512	-		GFF2611	0.60	-1.0
16,512	-		GFF2611	0.60	+0.4
16,512	-		GFF2611	0.60	+1.6
16,940	+				-0.1
17,018	+				+1.5
17,037	+				-0.6
17,037	+				+0.5
17,052	+				+0.3
17,052	+				+1.2
17,053	-				+0.0
17,053	-				-0.4
17,087	+				-0.6
17,087	+				+0.7
17,087	+				+0.8
17,154	+				-0.3
17,485	+		GFF2612	0.72	+0.4
17,485	+		GFF2612	0.72	+1.6
17,485	+		GFF2612	0.72	-2.5
17,486	-		GFF2612	0.72	-1.1
17,486	-		GFF2612	0.72	-0.8
17,486	-		GFF2612	0.72	+0.6
17,486	-		GFF2612	0.72	-0.5
17,486	-		GFF2612	0.72	-0.5
17,486	-		GFF2612	0.72	-1.0
17,486	-		GFF2612	0.72	+0.0
17,527	-		GFF2612	0.81	-0.5
17,609	+				-0.6
17,609	+				-1.2
17,610	-				-0.5
17,610	-				+0.2
17,610	-				-0.7
17,610	-				+1.6
17,637	+				+0.0
17,725	-				+0.0
17,725	-				+1.1
17,725	-				+0.2
17,800	-				-0.8
17,853	+				-0.7
17,998	+				-0.2
17,999	-				+0.0
18,026	-				-2.1
18,026	-				-1.5
18,070	+				-0.6
18,144	+				-0.6
18,144	+				-0.3
18,145	-				-0.4
18,185	+				-1.1
18,186	-				+0.5
18,186	-				-0.7
18,186	-				-0.7
18,231	+				+0.7
18,231	+				+0.0
18,232	-				+0.4
18,232	-				+0.5
18,249	-				-0.0
18,266	+				+0.3
18,267	-				+1.0
18,267	-				+0.0
18,312	-				-0.1
18,445	+				-0.2
18,445	+				-0.2
18,544	-				-1.5
18,565	-				+0.0
18,565	-				+1.2
18,568	+				+1.4
18,591	+				-0.4
18,591	+				+0.0
18,591	+				-0.5
18,591	+				+0.3
18,592	-				-0.4
18,592	-				+0.6