Strain Fitness in Variovorax sp. SCN45 around GFF258

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF257 and GFF258 overlap by 4 nucleotidesGFF258 and GFF259 are separated by 168 nucleotides GFF257 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 289,084 to 290,265 GFF257 GFF258 - Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298), at 290,262 to 291,140 GFF258 GFF259 - Bis-ABC ATPase YheS, at 291,309 to 293,309 GFF259 Position (kb) 290 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 290.499 kb on + strand, within GFF258at 290.499 kb on + strand, within GFF258at 290.499 kb on + strand, within GFF258at 290.500 kb on - strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.608 kb on - strand, within GFF258at 290.608 kb on - strand, within GFF258at 290.688 kb on + strand, within GFF258at 290.689 kb on - strand, within GFF258at 290.826 kb on + strand, within GFF258at 290.826 kb on + strand, within GFF258at 290.827 kb on - strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.854 kb on - strand, within GFF258at 290.854 kb on - strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.225 kb on + strandat 291.225 kb on + strandat 291.226 kb on - strandat 291.247 kb on + strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.296 kb on - strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.622 kb on - strand, within GFF259at 291.622 kb on - strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.673 kb on - strand, within GFF259at 291.673 kb on - strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.916 kb on - strand, within GFF259at 292.011 kb on + strand, within GFF259at 292.011 kb on + strand, within GFF259at 292.011 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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290,499 + GFF258 0.27 +0.2
290,499 + GFF258 0.27 +0.4
290,499 + GFF258 0.27 -0.1
290,500 - GFF258 0.27 +0.7
290,538 + GFF258 0.31 -0.7
290,538 + GFF258 0.31 +0.0
290,538 + GFF258 0.31 -1.0
290,538 + GFF258 0.31 -0.7
290,538 + GFF258 0.31 +0.0
290,538 + GFF258 0.31 +0.2
290,538 + GFF258 0.31 +0.7
290,538 + GFF258 0.31 +0.5
290,538 + GFF258 0.31 -0.6
290,538 + GFF258 0.31 +0.1
290,538 + GFF258 0.31 -1.1
290,539 - GFF258 0.32 -0.3
290,539 - GFF258 0.32 +0.4
290,539 - GFF258 0.32 +0.6
290,539 - GFF258 0.32 +0.5
290,539 - GFF258 0.32 -0.5
290,539 - GFF258 0.32 -0.3
290,608 - GFF258 0.39 +0.7
290,608 - GFF258 0.39 -0.1
290,688 + GFF258 0.48 -0.1
290,689 - GFF258 0.49 -1.7
290,826 + GFF258 0.64 +0.6
290,826 + GFF258 0.64 -0.1
290,827 - GFF258 0.64 +0.3
290,853 + GFF258 0.67 +0.1
290,853 + GFF258 0.67 +0.3
290,853 + GFF258 0.67 -0.6
290,853 + GFF258 0.67 +0.9
290,853 + GFF258 0.67 -0.3
290,853 + GFF258 0.67 -0.1
290,853 + GFF258 0.67 -0.5
290,853 + GFF258 0.67 -0.9
290,854 - GFF258 0.67 -1.5
290,854 - GFF258 0.67 -0.9
291,027 + GFF258 0.87 +0.6
291,027 + GFF258 0.87 +0.1
291,027 + GFF258 0.87 +0.7
291,028 - GFF258 0.87 -0.1
291,028 - GFF258 0.87 -2.1
291,028 - GFF258 0.87 -0.8
291,028 - GFF258 0.87 -0.3
291,028 - GFF258 0.87 -1.3
291,028 - GFF258 0.87 +0.6
291,028 - GFF258 0.87 +0.2
291,225 + -0.7
291,225 + -0.6
291,226 - -0.3
291,247 + +0.2
291,248 - -0.1
291,248 - +0.3
291,248 - -0.6
291,248 - -0.3
291,248 - +1.1
291,296 - -0.4
291,483 + +2.1
291,483 + -0.8
291,483 + +1.1
291,483 + +0.5
291,483 + -0.3
291,483 + -0.7
291,483 + +0.1
291,483 + -0.0
291,484 - +0.1
291,484 - -1.2
291,484 - -0.0
291,484 - +0.7
291,484 - -0.7
291,484 - -1.5
291,484 - -0.1
291,484 - -0.8
291,484 - -0.1
291,484 - -0.6
291,484 - +0.0
291,484 - -0.0
291,484 - +0.5
291,484 - +0.6
291,622 - GFF259 0.16 +0.5
291,622 - GFF259 0.16 -0.7
291,672 + GFF259 0.18 +0.3
291,672 + GFF259 0.18 +0.1
291,672 + GFF259 0.18 +1.3
291,672 + GFF259 0.18 -0.1
291,672 + GFF259 0.18 -0.5
291,672 + GFF259 0.18 +0.6
291,672 + GFF259 0.18 +1.2
291,673 - GFF259 0.18 -0.4
291,673 - GFF259 0.18 -3.4
291,915 + GFF259 0.30 -0.2
291,915 + GFF259 0.30 +1.8
291,915 + GFF259 0.30 -0.3
291,915 + GFF259 0.30 +0.6
291,915 + GFF259 0.30 -0.9
291,915 + GFF259 0.30 -0.4
291,915 + GFF259 0.30 +0.1
291,916 - GFF259 0.30 -1.9
292,011 + GFF259 0.35 -0.9
292,011 + GFF259 0.35 -1.0
292,011 + GFF259 0.35 -0.1
292,023 + GFF259 0.36 -1.8
292,023 + GFF259 0.36 +0.3
292,023 + GFF259 0.36 +0.6
292,023 + GFF259 0.36 -1.0
292,023 + GFF259 0.36 -0.2
292,023 + GFF259 0.36 -0.1
292,023 + GFF259 0.36 -0.6
292,023 + GFF259 0.36 -0.6
292,024 - GFF259 0.36 -0.0
292,024 - GFF259 0.36 -0.3
292,024 - GFF259 0.36 +0.9
292,024 - GFF259 0.36 +0.1
292,024 - GFF259 0.36 -1.5
292,024 - GFF259 0.36 -3.6
292,024 - GFF259 0.36 -1.5
292,024 - GFF259 0.36 -0.0
292,024 - GFF259 0.36 -0.6
292,024 - GFF259 0.36 -1.0
292,024 - GFF259 0.36 +0.7
292,024 - GFF259 0.36 -0.7
292,024 - GFF259 0.36 +0.6
292,024 - GFF259 0.36 -1.9
292,024 - GFF259 0.36 -0.7
292,024 - GFF259 0.36 -0.2
292,024 - GFF259 0.36 -0.8
292,024 - GFF259 0.36 +0.8
292,024 - GFF259 0.36 -0.4

Or see this region's nucleotide sequence