Strain Fitness in Variovorax sp. SCN45 around GFF2574

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2573 and GFF2574 are separated by 26 nucleotidesGFF2574 and GFF2575 are separated by 11 nucleotides GFF2573 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 630,447 to 631,481 GFF2573 GFF2574 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 631,508 to 632,386 GFF2574 GFF2575 - Quinolinate synthetase (EC 2.5.1.72), at 632,398 to 633,534 GFF2575 Position (kb) 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 630.585 kb on + strand, within GFF2573at 630.585 kb on + strand, within GFF2573at 630.585 kb on + strand, within GFF2573at 630.586 kb on - strand, within GFF2573at 630.586 kb on - strand, within GFF2573at 630.975 kb on + strand, within GFF2573at 630.975 kb on + strand, within GFF2573at 630.975 kb on + strand, within GFF2573at 630.975 kb on + strand, within GFF2573at 630.975 kb on + strand, within GFF2573at 630.975 kb on + strand, within GFF2573at 630.976 kb on - strand, within GFF2573at 630.976 kb on - strand, within GFF2573at 630.976 kb on - strand, within GFF2573at 630.976 kb on - strand, within GFF2573at 630.976 kb on - strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.299 kb on + strand, within GFF2573at 631.300 kb on - strand, within GFF2573at 631.300 kb on - strand, within GFF2573at 631.300 kb on - strand, within GFF2573at 631.300 kb on - strand, within GFF2573at 631.300 kb on - strand, within GFF2573at 631.300 kb on - strand, within GFF2573at 631.300 kb on - strand, within GFF2573at 631.300 kb on - strand, within GFF2573at 631.880 kb on + strand, within GFF2574at 631.880 kb on + strand, within GFF2574at 631.881 kb on - strand, within GFF2574at 631.961 kb on + strand, within GFF2574at 631.961 kb on + strand, within GFF2574at 631.962 kb on - strand, within GFF2574at 631.962 kb on - strand, within GFF2574at 631.962 kb on - strand, within GFF2574at 632.006 kb on + strand, within GFF2574at 632.006 kb on + strand, within GFF2574at 632.006 kb on + strand, within GFF2574at 632.007 kb on - strand, within GFF2574at 632.007 kb on - strand, within GFF2574at 632.007 kb on - strand, within GFF2574at 632.317 kb on + strandat 632.317 kb on + strandat 632.318 kb on - strandat 632.318 kb on - strandat 632.318 kb on - strandat 632.318 kb on - strandat 632.360 kb on + strandat 632.360 kb on + strandat 632.361 kb on - strandat 632.361 kb on - strandat 632.428 kb on + strandat 632.429 kb on - strandat 632.429 kb on - strandat 632.429 kb on - strandat 632.429 kb on - strandat 632.528 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.599 kb on + strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.600 kb on - strand, within GFF2575at 632.869 kb on + strand, within GFF2575at 632.869 kb on + strand, within GFF2575at 632.869 kb on + strand, within GFF2575at 632.870 kb on - strand, within GFF2575at 632.870 kb on - strand, within GFF2575at 632.870 kb on - strand, within GFF2575at 632.870 kb on - strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.267 kb on + strand, within GFF2575at 633.267 kb on + strand, within GFF2575at 633.267 kb on + strand, within GFF2575at 633.267 kb on + strand, within GFF2575at 633.268 kb on - strand, within GFF2575at 633.268 kb on - strand, within GFF2575at 633.303 kb on + strand, within GFF2575at 633.304 kb on - strand, within GFF2575at 633.304 kb on - strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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630,585 + GFF2573 0.13 +0.7
630,585 + GFF2573 0.13 -0.5
630,585 + GFF2573 0.13 -0.3
630,586 - GFF2573 0.13 +1.1
630,586 - GFF2573 0.13 -0.4
630,975 + GFF2573 0.51 -1.1
630,975 + GFF2573 0.51 +0.7
630,975 + GFF2573 0.51 -2.2
630,975 + GFF2573 0.51 -0.7
630,975 + GFF2573 0.51 -0.4
630,975 + GFF2573 0.51 +0.1
630,976 - GFF2573 0.51 -0.9
630,976 - GFF2573 0.51 +0.1
630,976 - GFF2573 0.51 +0.6
630,976 - GFF2573 0.51 +0.7
630,976 - GFF2573 0.51 -0.3
631,299 + GFF2573 0.82 +0.4
631,299 + GFF2573 0.82 -0.3
631,299 + GFF2573 0.82 +0.1
631,299 + GFF2573 0.82 -0.1
631,299 + GFF2573 0.82 -1.1
631,299 + GFF2573 0.82 +0.0
631,299 + GFF2573 0.82 -0.0
631,299 + GFF2573 0.82 -1.4
631,299 + GFF2573 0.82 -1.8
631,299 + GFF2573 0.82 +0.9
631,300 - GFF2573 0.82 +0.8
631,300 - GFF2573 0.82 -0.5
631,300 - GFF2573 0.82 +2.0
631,300 - GFF2573 0.82 -1.1
631,300 - GFF2573 0.82 +0.3
631,300 - GFF2573 0.82 -0.7
631,300 - GFF2573 0.82 -0.2
631,300 - GFF2573 0.82 -0.2
631,880 + GFF2574 0.42 -0.7
631,880 + GFF2574 0.42 -1.1
631,881 - GFF2574 0.42 -1.6
631,961 + GFF2574 0.52 -1.0
631,961 + GFF2574 0.52 -1.7
631,962 - GFF2574 0.52 -0.8
631,962 - GFF2574 0.52 -0.4
631,962 - GFF2574 0.52 -2.0
632,006 + GFF2574 0.57 -0.7
632,006 + GFF2574 0.57 -0.8
632,006 + GFF2574 0.57 -2.2
632,007 - GFF2574 0.57 +1.7
632,007 - GFF2574 0.57 -1.5
632,007 - GFF2574 0.57 -1.0
632,317 + -1.4
632,317 + -1.0
632,318 - -1.0
632,318 - -0.9
632,318 - -1.2
632,318 - -1.2
632,360 + -0.7
632,360 + -1.3
632,361 - -0.9
632,361 - -1.1
632,428 + -0.1
632,429 - -0.2
632,429 - -1.0
632,429 - -1.5
632,429 - -1.4
632,528 + GFF2575 0.11 -0.7
632,599 + GFF2575 0.18 -1.1
632,599 + GFF2575 0.18 -2.7
632,599 + GFF2575 0.18 -1.0
632,599 + GFF2575 0.18 +0.1
632,599 + GFF2575 0.18 -1.3
632,599 + GFF2575 0.18 -0.3
632,599 + GFF2575 0.18 -1.3
632,599 + GFF2575 0.18 -1.1
632,599 + GFF2575 0.18 -0.5
632,600 - GFF2575 0.18 -1.8
632,600 - GFF2575 0.18 -1.3
632,600 - GFF2575 0.18 -0.7
632,600 - GFF2575 0.18 -0.3
632,600 - GFF2575 0.18 -0.3
632,600 - GFF2575 0.18 -0.3
632,600 - GFF2575 0.18 -0.6
632,600 - GFF2575 0.18 -0.3
632,600 - GFF2575 0.18 -0.3
632,600 - GFF2575 0.18 -2.0
632,600 - GFF2575 0.18 -0.5
632,600 - GFF2575 0.18 -1.4
632,600 - GFF2575 0.18 -1.0
632,600 - GFF2575 0.18 +0.4
632,600 - GFF2575 0.18 -2.3
632,600 - GFF2575 0.18 -0.9
632,869 + GFF2575 0.41 -1.7
632,869 + GFF2575 0.41 -0.2
632,869 + GFF2575 0.41 -1.7
632,870 - GFF2575 0.42 -3.0
632,870 - GFF2575 0.42 -1.1
632,870 - GFF2575 0.42 +0.2
632,870 - GFF2575 0.42 -1.2
633,004 + GFF2575 0.53 -0.1
633,004 + GFF2575 0.53 -2.5
633,004 + GFF2575 0.53 -0.6
633,004 + GFF2575 0.53 -1.9
633,004 + GFF2575 0.53 +0.4
633,004 + GFF2575 0.53 -0.0
633,004 + GFF2575 0.53 -1.1
633,005 - GFF2575 0.53 -0.4
633,005 - GFF2575 0.53 +0.0
633,005 - GFF2575 0.53 +0.4
633,005 - GFF2575 0.53 -0.5
633,005 - GFF2575 0.53 -1.0
633,005 - GFF2575 0.53 -1.2
633,005 - GFF2575 0.53 -0.5
633,005 - GFF2575 0.53 -1.9
633,005 - GFF2575 0.53 -2.7
633,005 - GFF2575 0.53 -0.2
633,005 - GFF2575 0.53 -0.0
633,005 - GFF2575 0.53 +1.7
633,005 - GFF2575 0.53 +0.1
633,005 - GFF2575 0.53 -1.4
633,267 + GFF2575 0.76 -1.0
633,267 + GFF2575 0.76 -1.0
633,267 + GFF2575 0.76 +0.2
633,267 + GFF2575 0.76 -0.0
633,268 - GFF2575 0.77 -0.9
633,268 - GFF2575 0.77 +0.4
633,303 + GFF2575 0.80 -0.1
633,304 - GFF2575 0.80 +0.1
633,304 - GFF2575 0.80 -0.7
633,357 + GFF2575 0.84 +1.5
633,357 + GFF2575 0.84 +0.2
633,357 + GFF2575 0.84 -0.8
633,357 + GFF2575 0.84 -1.0
633,357 + GFF2575 0.84 -1.7
633,357 + GFF2575 0.84 -0.1
633,357 + GFF2575 0.84 -1.9
633,358 - GFF2575 0.84 -1.2
633,358 - GFF2575 0.84 +0.1
633,358 - GFF2575 0.84 -0.4
633,358 - GFF2575 0.84 -0.9
633,358 - GFF2575 0.84 -0.7
633,358 - GFF2575 0.84 +0.8
633,358 - GFF2575 0.84 -1.2
633,358 - GFF2575 0.84 +1.1
633,358 - GFF2575 0.84 -0.9

Or see this region's nucleotide sequence