Strain Fitness in Variovorax sp. SCN45 around GFF2567

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2566 and GFF2567 overlap by 4 nucleotidesGFF2567 and GFF2568 are separated by 12 nucleotides GFF2566 - AsmA, at 623,982 to 626,003 GFF2566 GFF2567 - Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80), at 626,000 to 626,758 GFF2567 GFF2568 - Carboxyl-terminal protease (EC 3.4.21.102), at 626,771 to 628,216 GFF2568 Position (kb) 625 626 627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 625.131 kb on + strand, within GFF2566at 625.131 kb on + strand, within GFF2566at 625.131 kb on + strand, within GFF2566at 625.131 kb on + strand, within GFF2566at 625.131 kb on + strand, within GFF2566at 625.131 kb on + strand, within GFF2566at 625.131 kb on + strand, within GFF2566at 625.132 kb on - strand, within GFF2566at 625.132 kb on - strand, within GFF2566at 625.132 kb on - strand, within GFF2566at 625.132 kb on - strand, within GFF2566at 625.132 kb on - strand, within GFF2566at 625.132 kb on - strand, within GFF2566at 625.132 kb on - strand, within GFF2566at 625.763 kb on + strand, within GFF2566at 625.763 kb on + strand, within GFF2566at 625.764 kb on - strand, within GFF2566at 625.764 kb on - strand, within GFF2566at 625.764 kb on - strand, within GFF2566at 625.764 kb on - strand, within GFF2566at 625.764 kb on - strand, within GFF2566at 625.764 kb on - strand, within GFF2566at 625.764 kb on - strand, within GFF2566at 626.001 kb on + strandat 626.001 kb on + strandat 626.001 kb on + strandat 626.001 kb on + strandat 626.002 kb on - strandat 626.002 kb on - strandat 626.002 kb on - strandat 626.071 kb on + strandat 626.071 kb on + strandat 626.072 kb on - strandat 626.072 kb on - strandat 626.072 kb on - strandat 626.072 kb on - strandat 626.072 kb on - strandat 626.072 kb on - strandat 626.195 kb on + strand, within GFF2567at 626.195 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.247 kb on + strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.248 kb on - strand, within GFF2567at 626.277 kb on + strand, within GFF2567at 626.277 kb on + strand, within GFF2567at 626.277 kb on + strand, within GFF2567at 626.277 kb on + strand, within GFF2567at 626.277 kb on + strand, within GFF2567at 626.277 kb on + strand, within GFF2567at 626.278 kb on - strand, within GFF2567at 626.278 kb on - strand, within GFF2567at 626.278 kb on - strand, within GFF2567at 626.278 kb on - strand, within GFF2567at 626.278 kb on - strand, within GFF2567at 626.278 kb on - strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.463 kb on + strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.464 kb on - strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.622 kb on + strand, within GFF2567at 626.623 kb on - strand, within GFF2567at 626.623 kb on - strand, within GFF2567at 626.623 kb on - strand, within GFF2567at 626.623 kb on - strand, within GFF2567at 626.623 kb on - strand, within GFF2567at 626.733 kb on + strandat 626.749 kb on + strandat 626.749 kb on + strandat 626.749 kb on + strandat 626.750 kb on - strandat 626.750 kb on - strandat 626.750 kb on - strandat 626.750 kb on - strandat 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.132 kb on + strand, within GFF2568at 627.133 kb on - strand, within GFF2568at 627.133 kb on - strand, within GFF2568at 627.133 kb on - strand, within GFF2568at 627.133 kb on - strand, within GFF2568at 627.133 kb on - strand, within GFF2568at 627.133 kb on - strand, within GFF2568at 627.133 kb on - strand, within GFF2568at 627.135 kb on + strand, within GFF2568at 627.135 kb on + strand, within GFF2568at 627.135 kb on + strand, within GFF2568at 627.135 kb on + strand, within GFF2568at 627.136 kb on - strand, within GFF2568at 627.136 kb on - strand, within GFF2568at 627.369 kb on + strand, within GFF2568at 627.369 kb on + strand, within GFF2568at 627.369 kb on + strand, within GFF2568at 627.369 kb on + strand, within GFF2568at 627.369 kb on + strand, within GFF2568at 627.369 kb on + strand, within GFF2568at 627.370 kb on - strand, within GFF2568at 627.370 kb on - strand, within GFF2568at 627.370 kb on - strand, within GFF2568at 627.370 kb on - strand, within GFF2568at 627.370 kb on - strand, within GFF2568at 627.370 kb on - strand, within GFF2568at 627.372 kb on + strand, within GFF2568at 627.373 kb on - strand, within GFF2568at 627.373 kb on - strand, within GFF2568at 627.373 kb on - strand, within GFF2568at 627.373 kb on - strand, within GFF2568at 627.390 kb on + strand, within GFF2568at 627.390 kb on + strand, within GFF2568at 627.390 kb on + strand, within GFF2568at 627.390 kb on + strand, within GFF2568at 627.390 kb on + strand, within GFF2568at 627.391 kb on - strand, within GFF2568at 627.391 kb on - strand, within GFF2568at 627.391 kb on - strand, within GFF2568at 627.391 kb on - strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.546 kb on + strand, within GFF2568at 627.547 kb on - strand, within GFF2568at 627.547 kb on - strand, within GFF2568at 627.547 kb on - strand, within GFF2568at 627.547 kb on - strand, within GFF2568at 627.547 kb on - strand, within GFF2568at 627.547 kb on - strand, within GFF2568at 627.547 kb on - strand, within GFF2568at 627.547 kb on - strand, within GFF2568at 627.618 kb on + strand, within GFF2568

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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625,131 + GFF2566 0.57 -0.5
625,131 + GFF2566 0.57 +0.7
625,131 + GFF2566 0.57 +1.0
625,131 + GFF2566 0.57 +0.4
625,131 + GFF2566 0.57 -0.2
625,131 + GFF2566 0.57 +0.3
625,131 + GFF2566 0.57 -0.4
625,132 - GFF2566 0.57 +0.1
625,132 - GFF2566 0.57 -0.1
625,132 - GFF2566 0.57 -0.3
625,132 - GFF2566 0.57 -0.9
625,132 - GFF2566 0.57 +1.2
625,132 - GFF2566 0.57 +1.1
625,132 - GFF2566 0.57 -0.2
625,763 + GFF2566 0.88 +1.1
625,763 + GFF2566 0.88 +0.3
625,764 - GFF2566 0.88 -1.0
625,764 - GFF2566 0.88 +0.1
625,764 - GFF2566 0.88 -0.3
625,764 - GFF2566 0.88 -0.6
625,764 - GFF2566 0.88 -0.2
625,764 - GFF2566 0.88 +0.1
625,764 - GFF2566 0.88 +1.1
626,001 + -1.1
626,001 + -0.9
626,001 + +0.4
626,001 + +0.4
626,002 - -0.3
626,002 - -0.3
626,002 - -0.6
626,071 + -1.1
626,071 + -1.0
626,072 - -0.4
626,072 - -0.7
626,072 - +0.3
626,072 - -1.2
626,072 - -0.7
626,072 - +0.5
626,195 + GFF2567 0.26 -1.0
626,195 + GFF2567 0.26 -0.1
626,247 + GFF2567 0.33 +0.0
626,247 + GFF2567 0.33 -0.5
626,247 + GFF2567 0.33 -1.4
626,247 + GFF2567 0.33 -1.2
626,247 + GFF2567 0.33 -1.1
626,247 + GFF2567 0.33 -0.7
626,247 + GFF2567 0.33 +0.3
626,247 + GFF2567 0.33 +0.2
626,247 + GFF2567 0.33 -0.4
626,247 + GFF2567 0.33 -0.5
626,247 + GFF2567 0.33 -1.0
626,247 + GFF2567 0.33 -0.2
626,247 + GFF2567 0.33 -1.6
626,247 + GFF2567 0.33 -1.0
626,247 + GFF2567 0.33 -0.3
626,247 + GFF2567 0.33 +0.3
626,247 + GFF2567 0.33 -0.9
626,247 + GFF2567 0.33 -1.4
626,247 + GFF2567 0.33 -1.4
626,247 + GFF2567 0.33 -0.2
626,247 + GFF2567 0.33 -2.0
626,247 + GFF2567 0.33 -1.1
626,247 + GFF2567 0.33 -0.8
626,247 + GFF2567 0.33 +0.1
626,247 + GFF2567 0.33 -0.7
626,247 + GFF2567 0.33 +0.4
626,248 - GFF2567 0.33 -0.6
626,248 - GFF2567 0.33 +0.1
626,248 - GFF2567 0.33 -1.0
626,248 - GFF2567 0.33 -1.7
626,248 - GFF2567 0.33 -0.4
626,248 - GFF2567 0.33 -0.3
626,248 - GFF2567 0.33 -1.7
626,248 - GFF2567 0.33 -1.1
626,248 - GFF2567 0.33 -0.5
626,248 - GFF2567 0.33 -1.3
626,248 - GFF2567 0.33 +0.3
626,248 - GFF2567 0.33 -1.0
626,248 - GFF2567 0.33 -0.9
626,248 - GFF2567 0.33 -0.4
626,248 - GFF2567 0.33 -0.6
626,248 - GFF2567 0.33 -0.4
626,277 + GFF2567 0.36 -2.2
626,277 + GFF2567 0.36 -0.0
626,277 + GFF2567 0.36 -0.7
626,277 + GFF2567 0.36 -0.3
626,277 + GFF2567 0.36 -2.0
626,277 + GFF2567 0.36 -0.1
626,278 - GFF2567 0.37 -0.8
626,278 - GFF2567 0.37 -2.9
626,278 - GFF2567 0.37 -1.4
626,278 - GFF2567 0.37 -1.3
626,278 - GFF2567 0.37 -0.5
626,278 - GFF2567 0.37 -1.1
626,463 + GFF2567 0.61 -0.5
626,463 + GFF2567 0.61 -1.6
626,463 + GFF2567 0.61 -0.3
626,463 + GFF2567 0.61 -1.2
626,463 + GFF2567 0.61 -0.9
626,463 + GFF2567 0.61 -0.5
626,463 + GFF2567 0.61 +0.5
626,463 + GFF2567 0.61 -2.9
626,463 + GFF2567 0.61 +0.5
626,463 + GFF2567 0.61 -1.1
626,463 + GFF2567 0.61 +0.4
626,463 + GFF2567 0.61 +0.2
626,463 + GFF2567 0.61 +1.1
626,463 + GFF2567 0.61 +0.4
626,464 - GFF2567 0.61 -0.6
626,464 - GFF2567 0.61 -1.7
626,464 - GFF2567 0.61 +0.4
626,464 - GFF2567 0.61 -1.3
626,464 - GFF2567 0.61 -1.1
626,464 - GFF2567 0.61 +0.6
626,464 - GFF2567 0.61 -1.1
626,464 - GFF2567 0.61 -0.5
626,464 - GFF2567 0.61 -0.7
626,464 - GFF2567 0.61 -0.7
626,464 - GFF2567 0.61 -0.9
626,464 - GFF2567 0.61 -0.3
626,464 - GFF2567 0.61 -1.2
626,464 - GFF2567 0.61 -0.2
626,464 - GFF2567 0.61 -1.3
626,464 - GFF2567 0.61 -1.2
626,464 - GFF2567 0.61 -0.4
626,622 + GFF2567 0.82 +0.1
626,622 + GFF2567 0.82 -0.6
626,622 + GFF2567 0.82 -2.1
626,622 + GFF2567 0.82 +0.2
626,622 + GFF2567 0.82 -2.3
626,622 + GFF2567 0.82 -0.4
626,622 + GFF2567 0.82 -0.7
626,622 + GFF2567 0.82 -1.3
626,622 + GFF2567 0.82 -0.7
626,622 + GFF2567 0.82 +0.3
626,622 + GFF2567 0.82 -0.0
626,622 + GFF2567 0.82 +0.1
626,622 + GFF2567 0.82 -2.4
626,622 + GFF2567 0.82 -0.3
626,623 - GFF2567 0.82 -1.4
626,623 - GFF2567 0.82 -0.9
626,623 - GFF2567 0.82 -0.3
626,623 - GFF2567 0.82 +0.7
626,623 - GFF2567 0.82 +0.0
626,733 + -0.9
626,749 + -0.8
626,749 + +0.4
626,749 + -0.2
626,750 - -0.5
626,750 - -0.1
626,750 - +2.1
626,750 - -0.6
627,132 + GFF2568 0.25 -0.6
627,132 + GFF2568 0.25 +0.1
627,132 + GFF2568 0.25 -1.6
627,132 + GFF2568 0.25 -0.3
627,132 + GFF2568 0.25 +0.4
627,132 + GFF2568 0.25 +0.1
627,132 + GFF2568 0.25 -1.4
627,132 + GFF2568 0.25 -0.2
627,132 + GFF2568 0.25 -0.2
627,132 + GFF2568 0.25 -0.3
627,133 - GFF2568 0.25 -0.9
627,133 - GFF2568 0.25 -0.0
627,133 - GFF2568 0.25 +0.7
627,133 - GFF2568 0.25 -1.1
627,133 - GFF2568 0.25 +0.1
627,133 - GFF2568 0.25 -2.7
627,133 - GFF2568 0.25 +1.7
627,135 + GFF2568 0.25 -1.7
627,135 + GFF2568 0.25 -0.7
627,135 + GFF2568 0.25 -1.1
627,135 + GFF2568 0.25 -0.3
627,136 - GFF2568 0.25 -1.2
627,136 - GFF2568 0.25 -1.3
627,369 + GFF2568 0.41 -1.7
627,369 + GFF2568 0.41 -0.3
627,369 + GFF2568 0.41 +1.3
627,369 + GFF2568 0.41 -1.1
627,369 + GFF2568 0.41 -0.9
627,369 + GFF2568 0.41 +0.2
627,370 - GFF2568 0.41 +0.3
627,370 - GFF2568 0.41 +0.7
627,370 - GFF2568 0.41 +0.1
627,370 - GFF2568 0.41 -0.5
627,370 - GFF2568 0.41 -1.1
627,370 - GFF2568 0.41 +1.1
627,372 + GFF2568 0.42 -0.8
627,373 - GFF2568 0.42 +0.3
627,373 - GFF2568 0.42 -0.6
627,373 - GFF2568 0.42 -1.3
627,373 - GFF2568 0.42 +0.4
627,390 + GFF2568 0.43 -0.3
627,390 + GFF2568 0.43 -1.1
627,390 + GFF2568 0.43 -0.5
627,390 + GFF2568 0.43 -0.3
627,390 + GFF2568 0.43 -1.2
627,391 - GFF2568 0.43 -0.8
627,391 - GFF2568 0.43 -0.3
627,391 - GFF2568 0.43 +0.1
627,391 - GFF2568 0.43 +0.4
627,546 + GFF2568 0.54 -2.4
627,546 + GFF2568 0.54 +0.4
627,546 + GFF2568 0.54 -0.3
627,546 + GFF2568 0.54 +0.3
627,546 + GFF2568 0.54 +0.9
627,546 + GFF2568 0.54 -0.6
627,546 + GFF2568 0.54 +0.7
627,546 + GFF2568 0.54 -3.0
627,546 + GFF2568 0.54 -0.1
627,546 + GFF2568 0.54 -0.0
627,546 + GFF2568 0.54 -0.3
627,546 + GFF2568 0.54 -0.4
627,546 + GFF2568 0.54 -0.3
627,546 + GFF2568 0.54 -1.6
627,546 + GFF2568 0.54 +0.5
627,547 - GFF2568 0.54 -1.7
627,547 - GFF2568 0.54 +0.5
627,547 - GFF2568 0.54 +1.2
627,547 - GFF2568 0.54 +0.3
627,547 - GFF2568 0.54 +1.7
627,547 - GFF2568 0.54 +0.3
627,547 - GFF2568 0.54 +2.0
627,547 - GFF2568 0.54 -0.6
627,618 + GFF2568 0.59 +0.1

Or see this region's nucleotide sequence